miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 52449 0.66 0.619599
Target:  5'- cGCCGCcgCCGUga---CGGCGGCCa- -3'
miRNA:   3'- -CGGUGuaGGCGagggaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 52018 0.68 0.494272
Target:  5'- cGCCGCG-CCaGCU-CCUCGGCgaaGGCCg- -3'
miRNA:   3'- -CGGUGUaGG-CGAgGGAGCCG---CCGGag -5'
29638 3' -62.1 NC_006151.1 + 51277 0.71 0.343265
Target:  5'- aUCACGagCGCgCCCUCGGgGGCCg- -3'
miRNA:   3'- cGGUGUagGCGaGGGAGCCgCCGGag -5'
29638 3' -62.1 NC_006151.1 + 50834 0.79 0.112229
Target:  5'- gGCCcgcGCcgCCGUcCCCUCGGCGGCCg- -3'
miRNA:   3'- -CGG---UGuaGGCGaGGGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 49952 0.68 0.522381
Target:  5'- aCCugG-CCGCggCCCU-GGcCGGCCUCc -3'
miRNA:   3'- cGGugUaGGCGa-GGGAgCC-GCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 48643 0.67 0.545304
Target:  5'- cGCCACcgCCGCUgcagcagcagccCCCgccggggcaggggcCGG-GGCCUCg -3'
miRNA:   3'- -CGGUGuaGGCGA------------GGGa-------------GCCgCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 46981 0.66 0.599883
Target:  5'- gGCCGCcgCCGCUCCUgcccccacuUCGGCucCCg- -3'
miRNA:   3'- -CGGUGuaGGCGAGGG---------AGCCGccGGag -5'
29638 3' -62.1 NC_006151.1 + 40403 0.73 0.245034
Target:  5'- uCUGCGUCCGCgg---CGGCGGCCUCg -3'
miRNA:   3'- cGGUGUAGGCGagggaGCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 40238 0.7 0.389803
Target:  5'- uGCUGC-UCCGCUgagcggggcgccCCCUCGGCccGGCCg- -3'
miRNA:   3'- -CGGUGuAGGCGA------------GGGAGCCG--CCGGag -5'
29638 3' -62.1 NC_006151.1 + 40041 0.67 0.576344
Target:  5'- cGCCGCcgggggcgCCGUggagacccaccggCCCgCGGgGGCCUCg -3'
miRNA:   3'- -CGGUGua------GGCGa------------GGGaGCCgCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 39145 0.74 0.223112
Target:  5'- gGCCugGgacCCGCgCCg-CGGCGGCCUCu -3'
miRNA:   3'- -CGGugUa--GGCGaGGgaGCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 38860 0.75 0.184261
Target:  5'- cCCACAcgCCGCggCCCUCcgaGGCGGcCCUCg -3'
miRNA:   3'- cGGUGUa-GGCGa-GGGAG---CCGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 38806 0.69 0.423037
Target:  5'- uGCCcgaGCAccCCGCgCCCgaCGGCGGCUUCc -3'
miRNA:   3'- -CGG---UGUa-GGCGaGGGa-GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 38691 0.72 0.28766
Target:  5'- cGgCGCAagcgCCGCUCCCUCGGacucgGGCC-Cg -3'
miRNA:   3'- -CgGUGUa---GGCGAGGGAGCCg----CCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 37393 0.71 0.328668
Target:  5'- gGCCGCGUCCGCUa---CGGCGGCg-- -3'
miRNA:   3'- -CGGUGUAGGCGAgggaGCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 37182 0.76 0.179848
Target:  5'- cGCCGCGgccCCGCggCCCUCGGCcuccuccGCCUCc -3'
miRNA:   3'- -CGGUGUa--GGCGa-GGGAGCCGc------CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 37023 0.69 0.449049
Target:  5'- cGCCGCcgCCGCgcggCgCUCGGCcuCCUCc -3'
miRNA:   3'- -CGGUGuaGGCGa---GgGAGCCGccGGAG- -5'
29638 3' -62.1 NC_006151.1 + 36376 0.67 0.580255
Target:  5'- aGCgGCAgaggCCGgggCCCcCGGCGGCCcCg -3'
miRNA:   3'- -CGgUGUa---GGCga-GGGaGCCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 36041 0.68 0.493347
Target:  5'- cGCCGCGgcuccUCCGgcgaggauCUCCuCUUcggcccgGGCGGCCUCu -3'
miRNA:   3'- -CGGUGU-----AGGC--------GAGG-GAG-------CCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 36002 0.66 0.639351
Target:  5'- aUCGCGUCCgGC-CCCgaCGGCGGCa-- -3'
miRNA:   3'- cGGUGUAGG-CGaGGGa-GCCGCCGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.