miRNA display CGI


Results 101 - 120 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 35853 0.74 0.239391
Target:  5'- cGCCGC--CCGCUCUccgcgCUCGGCgcccGGCCUCg -3'
miRNA:   3'- -CGGUGuaGGCGAGG-----GAGCCG----CCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 35580 0.7 0.406207
Target:  5'- gGCCAUugGUCCGCUUaCCUgggGGCGGgCUCu -3'
miRNA:   3'- -CGGUG--UAGGCGAG-GGAg--CCGCCgGAG- -5'
29638 3' -62.1 NC_006151.1 + 31807 0.74 0.217899
Target:  5'- cGCCGCGUCCuccuccucCUCCCUCcccGcCGGCCUCg -3'
miRNA:   3'- -CGGUGUAGGc-------GAGGGAGc--C-GCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 31210 0.66 0.629474
Target:  5'- cCCGCGUCCagGCcgggCCCcCGGCcGGCCg- -3'
miRNA:   3'- cGGUGUAGG--CGa---GGGaGCCG-CCGGag -5'
29638 3' -62.1 NC_006151.1 + 31019 0.72 0.314535
Target:  5'- gGUCGCcgCCGCggCCCUCG-CGGCC-Cg -3'
miRNA:   3'- -CGGUGuaGGCGa-GGGAGCcGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 26574 0.66 0.619599
Target:  5'- aGCCcucucCGUCCGagccgUCCUCGGgGGgCUCa -3'
miRNA:   3'- -CGGu----GUAGGCga---GGGAGCCgCCgGAG- -5'
29638 3' -62.1 NC_006151.1 + 26363 0.68 0.503568
Target:  5'- gGCCGCGUCggggcgCGCgUCCCcCGGCGGgCg- -3'
miRNA:   3'- -CGGUGUAG------GCG-AGGGaGCCGCCgGag -5'
29638 3' -62.1 NC_006151.1 + 24868 0.66 0.590055
Target:  5'- aCCACcguGUCCGCcucgCCCggcCGGCgGGCCa- -3'
miRNA:   3'- cGGUG---UAGGCGa---GGGa--GCCG-CCGGag -5'
29638 3' -62.1 NC_006151.1 + 23234 0.76 0.179848
Target:  5'- gGUCACcUCCuCgCCCUCGGgGGCCUCg -3'
miRNA:   3'- -CGGUGuAGGcGaGGGAGCCgCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 19723 0.66 0.649222
Target:  5'- gGCCGag-CCGaagCCCgcgCGGCGGUCgUCg -3'
miRNA:   3'- -CGGUguaGGCga-GGGa--GCCGCCGG-AG- -5'
29638 3' -62.1 NC_006151.1 + 17330 0.67 0.54146
Target:  5'- cGCCGCGUCaGCUCgugcgUCUCGGUGGUg-- -3'
miRNA:   3'- -CGGUGUAGgCGAG-----GGAGCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 15917 0.73 0.25665
Target:  5'- cCCGCcgCCGC-CCCgugaGGCGGgCCUCg -3'
miRNA:   3'- cGGUGuaGGCGaGGGag--CCGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 12799 0.69 0.466873
Target:  5'- cGgCGCGcCCGCUCCCUCcGCGuccCCUCu -3'
miRNA:   3'- -CgGUGUaGGCGAGGGAGcCGCc--GGAG- -5'
29638 3' -62.1 NC_006151.1 + 11363 0.66 0.599883
Target:  5'- cGCUACcgCgCGCUCCgCUCG-CcGCCUCu -3'
miRNA:   3'- -CGGUGuaG-GCGAGG-GAGCcGcCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 10511 0.72 0.28766
Target:  5'- cGCCGCAggCGCgUCCC-CGGCGcgggcGCCUCu -3'
miRNA:   3'- -CGGUGUagGCG-AGGGaGCCGC-----CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 9468 0.7 0.381765
Target:  5'- uCCGCGUCCGCUucggCCCcCcGCGGCCg- -3'
miRNA:   3'- cGGUGUAGGCGA----GGGaGcCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 8304 0.7 0.372266
Target:  5'- cGCCGCGUcCCGC-CCCgagcccccggggCGcGCGGgCCUCg -3'
miRNA:   3'- -CGGUGUA-GGCGaGGGa-----------GC-CGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 7269 0.69 0.431608
Target:  5'- cCCACGUggCCGC--CCUCGGCcaauggGGCCUCa -3'
miRNA:   3'- cGGUGUA--GGCGagGGAGCCG------CCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 7011 0.69 0.457915
Target:  5'- -gCAUGUCCgGCcCCCgCGGCGGCCa- -3'
miRNA:   3'- cgGUGUAGG-CGaGGGaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 6949 0.66 0.599883
Target:  5'- cGCCAUcUUgGC-CCCUCGaCGGCCa- -3'
miRNA:   3'- -CGGUGuAGgCGaGGGAGCcGCCGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.