Results 121 - 127 of 127 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29638 | 3' | -62.1 | NC_006151.1 | + | 6141 | 0.75 | 0.207784 |
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Target: 5'- gGCCGCggCCGCgaggaCGGCGGCCUCg -3' miRNA: 3'- -CGGUGuaGGCGagggaGCCGCCGGAG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 5902 | 0.68 | 0.522381 |
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Target: 5'- cGCUGCGagUGCUgCCggggUCGGCGGCCg- -3' miRNA: 3'- -CGGUGUagGCGAgGG----AGCCGCCGGag -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 4022 | 0.69 | 0.457915 |
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Target: 5'- gGCCGCGg-CGUaggUCCa--GGCGGCCUCg -3' miRNA: 3'- -CGGUGUagGCG---AGGgagCCGCCGGAG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 3941 | 0.76 | 0.175102 |
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Target: 5'- gGCCGgGcgcgggcUCCGCgggCCCgggccgcgCGGCGGCCUCg -3' miRNA: 3'- -CGGUgU-------AGGCGa--GGGa-------GCCGCCGGAG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 3113 | 0.72 | 0.309698 |
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Target: 5'- cGCCGCggcgcggGUCCcaggccgggcgcgggGCgCCCUCGGCGGgCUCg -3' miRNA: 3'- -CGGUG-------UAGG---------------CGaGGGAGCCGCCgGAG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 2403 | 0.72 | 0.307642 |
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Target: 5'- gGCCGCGgagcUCgGCgaggCCC-CGGCGGCCg- -3' miRNA: 3'- -CGGUGU----AGgCGa---GGGaGCCGCCGGag -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 1 | 0.73 | 0.262625 |
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Target: 5'- cCCACcccCCGCUCCC-CGGgGGCCg- -3' miRNA: 3'- cGGUGua-GGCGAGGGaGCCgCCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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