miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 133421 0.66 0.639351
Target:  5'- gGCCGCGgaCGCgggggUCUUGGCGGCCg- -3'
miRNA:   3'- -CGGUGUagGCGag---GGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 135991 0.66 0.639351
Target:  5'- gGCCACcUUCGC-CCUccaCGaCGGCCUCa -3'
miRNA:   3'- -CGGUGuAGGCGaGGGa--GCcGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 36002 0.66 0.639351
Target:  5'- aUCGCGUCCgGC-CCCgaCGGCGGCa-- -3'
miRNA:   3'- cGGUGUAGG-CGaGGGa-GCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 99001 0.66 0.646262
Target:  5'- cGCCACG-CCGCgcacggCCgUCGaggugcgcgucuccGCGGcCCUCg -3'
miRNA:   3'- -CGGUGUaGGCGa-----GGgAGC--------------CGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 19723 0.66 0.649222
Target:  5'- gGCCGag-CCGaagCCCgcgCGGCGGUCgUCg -3'
miRNA:   3'- -CGGUguaGGCga-GGGa--GCCGCCGG-AG- -5'
29638 3' -62.1 NC_006151.1 + 78130 0.66 0.629474
Target:  5'- uGCgGCGggCCGCgggCgCCUCGGaCGacGCCUCg -3'
miRNA:   3'- -CGgUGUa-GGCGa--G-GGAGCC-GC--CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 67052 0.66 0.629474
Target:  5'- cGCCACcgCCua--CCUgcUGGCGGCCUUc -3'
miRNA:   3'- -CGGUGuaGGcgagGGA--GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 36376 0.67 0.580255
Target:  5'- aGCgGCAgaggCCGgggCCCcCGGCGGCCcCg -3'
miRNA:   3'- -CGgUGUa---GGCga-GGGaGCCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 109245 0.67 0.580255
Target:  5'- aGCCGCcgCgGuCUCCgCU-GGCGGCCcCg -3'
miRNA:   3'- -CGGUGuaGgC-GAGG-GAgCCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 24868 0.66 0.590055
Target:  5'- aCCACcguGUCCGCcucgCCCggcCGGCgGGCCa- -3'
miRNA:   3'- cGGUG---UAGGCGa---GGGa--GCCG-CCGGag -5'
29638 3' -62.1 NC_006151.1 + 87192 0.66 0.590055
Target:  5'- cGCCGCAgCUGCUgCCgccCGG-GGCCgUCg -3'
miRNA:   3'- -CGGUGUaGGCGAgGGa--GCCgCCGG-AG- -5'
29638 3' -62.1 NC_006151.1 + 124930 0.66 0.599883
Target:  5'- uUCACGUCgCGggCCCUgGGCG-CCUCc -3'
miRNA:   3'- cGGUGUAG-GCgaGGGAgCCGCcGGAG- -5'
29638 3' -62.1 NC_006151.1 + 11363 0.66 0.599883
Target:  5'- cGCUACcgCgCGCUCCgCUCG-CcGCCUCu -3'
miRNA:   3'- -CGGUGuaG-GCGAGG-GAGCcGcCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 6949 0.66 0.599883
Target:  5'- cGCCAUcUUgGC-CCCUCGaCGGCCa- -3'
miRNA:   3'- -CGGUGuAGgCGaGGGAGCcGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 46981 0.66 0.599883
Target:  5'- gGCCGCcgCCGCUCCUgcccccacuUCGGCucCCg- -3'
miRNA:   3'- -CGGUGuaGGCGAGGG---------AGCCGccGGag -5'
29638 3' -62.1 NC_006151.1 + 89025 0.66 0.609733
Target:  5'- aGCCGCucccggcacacgAUgCGCUugcgCCCgugcgCGGUGGCCUUg -3'
miRNA:   3'- -CGGUG------------UAgGCGA----GGGa----GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 26574 0.66 0.619599
Target:  5'- aGCCcucucCGUCCGagccgUCCUCGGgGGgCUCa -3'
miRNA:   3'- -CGGu----GUAGGCga---GGGAGCCgCCgGAG- -5'
29638 3' -62.1 NC_006151.1 + 52449 0.66 0.619599
Target:  5'- cGCCGCcgCCGUga---CGGCGGCCa- -3'
miRNA:   3'- -CGGUGuaGGCGagggaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 79760 0.66 0.619599
Target:  5'- cCCGCGgguccCCGgUCCa-CGGCGGCCg- -3'
miRNA:   3'- cGGUGUa----GGCgAGGgaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 116087 0.66 0.629474
Target:  5'- aGCCGCcgCCGUcgUCCUCGucggcgauggcGCGGCgCUUg -3'
miRNA:   3'- -CGGUGuaGGCGa-GGGAGC-----------CGCCG-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.