miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 5' -54.4 NC_006151.1 + 60295 0.66 0.955095
Target:  5'- -gGuAGACgGAGGCCAuguCCGggccguGCGCCAUCg -3'
miRNA:   3'- agC-UCUGgCUCUGGU---GGU------UGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 69950 0.66 0.955095
Target:  5'- gCGAGAcgaacagccccCCGGGGCCGCgCGgGCGCUGCa -3'
miRNA:   3'- aGCUCU-----------GGCUCUGGUG-GU-UGUGGUGg -5'
29638 5' -54.4 NC_006151.1 + 124504 0.66 0.955095
Target:  5'- cCGcGGCUGGcacACCACCAACGaCACCu -3'
miRNA:   3'- aGCuCUGGCUc--UGGUGGUUGUgGUGG- -5'
29638 5' -54.4 NC_006151.1 + 141521 0.66 0.955095
Target:  5'- -gGGGGCCGAGGCgACgGACgugagcgaGCUGCUg -3'
miRNA:   3'- agCUCUGGCUCUGgUGgUUG--------UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 18420 0.66 0.955095
Target:  5'- cCGGGGgaGgaGGGCCGCCGGCGggcgucgcCCGCCu -3'
miRNA:   3'- aGCUCUggC--UCUGGUGGUUGU--------GGUGG- -5'
29638 5' -54.4 NC_006151.1 + 22725 0.66 0.955095
Target:  5'- cUCGGucucGACCGAGAgC-UgGAgGCCGCCg -3'
miRNA:   3'- -AGCU----CUGGCUCUgGuGgUUgUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 39879 0.66 0.955095
Target:  5'- cCGAGggccugccgGCCGAGuuGCgCGCCuuCugCGCCg -3'
miRNA:   3'- aGCUC---------UGGCUC--UG-GUGGuuGugGUGG- -5'
29638 5' -54.4 NC_006151.1 + 52918 0.66 0.955095
Target:  5'- cCGGGAgCGugaAGACCACaAACugCGCg -3'
miRNA:   3'- aGCUCUgGC---UCUGGUGgUUGugGUGg -5'
29638 5' -54.4 NC_006151.1 + 50643 0.66 0.954314
Target:  5'- gCGAcGGCCGcgggcGGACCcgagucgugcgcgGCCGcacccccGCGCCGCCg -3'
miRNA:   3'- aGCU-CUGGC-----UCUGG-------------UGGU-------UGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 36146 0.66 0.95392
Target:  5'- aCGAGGCCGccccguccuccuucGGcCCAgCAGCAgcagcagccCCGCCg -3'
miRNA:   3'- aGCUCUGGC--------------UCuGGUgGUUGU---------GGUGG- -5'
29638 5' -54.4 NC_006151.1 + 57335 0.66 0.951506
Target:  5'- aCGGGAagccgacaaaguccgCGGGGCC-CUcGCGCCGCCg -3'
miRNA:   3'- aGCUCUg--------------GCUCUGGuGGuUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 55172 0.66 0.951506
Target:  5'- aCGAGACCGGGGCgCGCauccuggacagcgugGACACgucgcaGCCg -3'
miRNA:   3'- aGCUCUGGCUCUG-GUGg--------------UUGUGg-----UGG- -5'
29638 5' -54.4 NC_006151.1 + 60068 0.66 0.951096
Target:  5'- gCGGGAgaaGAGGCgCAUCccgcGCGCCGCCg -3'
miRNA:   3'- aGCUCUgg-CUCUG-GUGGu---UGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 61768 0.66 0.951096
Target:  5'- -gGGGGCCGuGGugCugCGGCGCgagGCCg -3'
miRNA:   3'- agCUCUGGC-UCugGugGUUGUGg--UGG- -5'
29638 5' -54.4 NC_006151.1 + 72007 0.66 0.951096
Target:  5'- cCGuuGCUGaAGACCACguCGGCGCC-CCg -3'
miRNA:   3'- aGCucUGGC-UCUGGUG--GUUGUGGuGG- -5'
29638 5' -54.4 NC_006151.1 + 87282 0.66 0.951096
Target:  5'- ----aGCCGGGGCUGCacGCGCCGCCc -3'
miRNA:   3'- agcucUGGCUCUGGUGguUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 99138 0.66 0.951096
Target:  5'- cCGGGGCgcAGGCCguGCaCGugGCCGCCg -3'
miRNA:   3'- aGCUCUGgcUCUGG--UG-GUugUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 119031 0.66 0.951096
Target:  5'- cCGAGGCgGGcGCCAaggaCGGCGgCGCCg -3'
miRNA:   3'- aGCUCUGgCUcUGGUg---GUUGUgGUGG- -5'
29638 5' -54.4 NC_006151.1 + 22079 0.66 0.951096
Target:  5'- aCGuGGGCgCGguacguGGGCCGCCggUggGCCACCg -3'
miRNA:   3'- aGC-UCUG-GC------UCUGGUGGuuG--UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 3423 0.66 0.951096
Target:  5'- cUCGccGGCCGGGACgCGgCGgaaGCCGCCg -3'
miRNA:   3'- -AGCu-CUGGCUCUG-GUgGUug-UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.