Results 41 - 60 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 21867 | 0.66 | 0.829704 |
Target: 5'- -aGGCGCCGguaCUggcccucguugaaccGCCccggagccaccaugAGCAGCCCCa -3' miRNA: 3'- gaCUGCGGCaa-GA---------------UGG--------------UCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 122970 | 0.66 | 0.830534 |
Target: 5'- -gGACGCCGgcgacgggggcgUCggcgacgaagacggGcCCGGCGcGCCCCCg -3' miRNA: 3'- gaCUGCGGCa-----------AGa-------------U-GGUCGU-CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 18717 | 0.66 | 0.834657 |
Target: 5'- gUGACGCCGUccacguagaucgcgUCgucGCCGccGCcggGGCCCCa -3' miRNA: 3'- gACUGCGGCA--------------AGa--UGGU--CG---UCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 3487 | 0.66 | 0.83711 |
Target: 5'- -gGGCGCCGga--GCCGGUcGUCCUCg -3' miRNA: 3'- gaCUGCGGCaagaUGGUCGuCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 50878 | 0.66 | 0.83711 |
Target: 5'- -gGACcCCGUccCgggGCCGGCcgcGCCCCCc -3' miRNA: 3'- gaCUGcGGCAa-Ga--UGGUCGu--CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 39966 | 0.67 | 0.785205 |
Target: 5'- -gGGCGCCGUcgCcGCC-GCGGgCgCCCCg -3' miRNA: 3'- gaCUGCGGCAa-GaUGGuCGUC-G-GGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 13742 | 0.67 | 0.785205 |
Target: 5'- -gGACGcCCGUcccgCggGCCGGaCcGCCCCCu -3' miRNA: 3'- gaCUGC-GGCAa---Ga-UGGUC-GuCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 107024 | 0.67 | 0.776033 |
Target: 5'- -cGGCGCUGaUC-GCgGcGCGGCCCCUg -3' miRNA: 3'- gaCUGCGGCaAGaUGgU-CGUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 118894 | 0.67 | 0.776033 |
Target: 5'- -cGACGCgGcc--GCCGGCGGCCUCg -3' miRNA: 3'- gaCUGCGgCaagaUGGUCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 72877 | 0.67 | 0.776033 |
Target: 5'- -cGGCGcCCGUgucggCgaugaGCCGcGcCAGCCCCCg -3' miRNA: 3'- gaCUGC-GGCAa----Ga----UGGU-C-GUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 39664 | 0.67 | 0.776033 |
Target: 5'- gCUGcCGCCGcgCgccuaccGCCAGCGcguGCuCCCCa -3' miRNA: 3'- -GACuGCGGCaaGa------UGGUCGU---CG-GGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 41521 | 0.67 | 0.785205 |
Target: 5'- -gGGCGCCGcgg-AgCGGaAGCCCCCg -3' miRNA: 3'- gaCUGCGGCaagaUgGUCgUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 139640 | 0.67 | 0.785205 |
Target: 5'- -cGGCGCCGgcgcgggggUCgcgGCgGGCGcGCCgCCCg -3' miRNA: 3'- gaCUGCGGCa--------AGa--UGgUCGU-CGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 133646 | 0.67 | 0.788836 |
Target: 5'- -gGugGuCCGggugcgagaggcgCUGCCGGCGcggcggcgcGCCCCCg -3' miRNA: 3'- gaCugC-GGCaa-----------GAUGGUCGU---------CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 59301 | 0.67 | 0.793344 |
Target: 5'- gUGGCGCCcg-CgGCuCAGCGggcccgcGCCCCCg -3' miRNA: 3'- gACUGCGGcaaGaUG-GUCGU-------CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 53410 | 0.67 | 0.794242 |
Target: 5'- -cGACgGCCGUg--AgCAGguGCCgCCCg -3' miRNA: 3'- gaCUG-CGGCAagaUgGUCguCGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 102898 | 0.67 | 0.794242 |
Target: 5'- cCUG-CGCCGccucgUCgacucGCUGGCGGCCgCCg -3' miRNA: 3'- -GACuGCGGCa----AGa----UGGUCGUCGGgGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 104727 | 0.67 | 0.794242 |
Target: 5'- -cGGCGCCGUgacCUACCuGgAGCgCUUCg -3' miRNA: 3'- gaCUGCGGCAa--GAUGGuCgUCG-GGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 111382 | 0.67 | 0.794242 |
Target: 5'- ---uCGCCGUcgUCgccgccGCCGGCA-CCCCCg -3' miRNA: 3'- gacuGCGGCA--AGa-----UGGUCGUcGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 73443 | 0.67 | 0.775108 |
Target: 5'- uUGGCGCggggcugCGUgagCUGCagguGCAGCCCgCCg -3' miRNA: 3'- gACUGCG-------GCAa--GAUGgu--CGUCGGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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