miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 104727 0.67 0.794242
Target:  5'- -cGGCGCCGUgacCUACCuGgAGCgCUUCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGuCgUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 102898 0.67 0.794242
Target:  5'- cCUG-CGCCGccucgUCgacucGCUGGCGGCCgCCg -3'
miRNA:   3'- -GACuGCGGCa----AGa----UGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 53410 0.67 0.794242
Target:  5'- -cGACgGCCGUg--AgCAGguGCCgCCCg -3'
miRNA:   3'- gaCUG-CGGCAagaUgGUCguCGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 59301 0.67 0.793344
Target:  5'- gUGGCGCCcg-CgGCuCAGCGggcccgcGCCCCCg -3'
miRNA:   3'- gACUGCGGcaaGaUG-GUCGU-------CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 133646 0.67 0.788836
Target:  5'- -gGugGuCCGggugcgagaggcgCUGCCGGCGcggcggcgcGCCCCCg -3'
miRNA:   3'- gaCugC-GGCaa-----------GAUGGUCGU---------CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 139640 0.67 0.785205
Target:  5'- -cGGCGCCGgcgcgggggUCgcgGCgGGCGcGCCgCCCg -3'
miRNA:   3'- gaCUGCGGCa--------AGa--UGgUCGU-CGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 41521 0.67 0.785205
Target:  5'- -gGGCGCCGcgg-AgCGGaAGCCCCCg -3'
miRNA:   3'- gaCUGCGGCaagaUgGUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 39966 0.67 0.785205
Target:  5'- -gGGCGCCGUcgCcGCC-GCGGgCgCCCCg -3'
miRNA:   3'- gaCUGCGGCAa-GaUGGuCGUC-G-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 13742 0.67 0.785205
Target:  5'- -gGACGcCCGUcccgCggGCCGGaCcGCCCCCu -3'
miRNA:   3'- gaCUGC-GGCAa---Ga-UGGUC-GuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 139102 0.68 0.718658
Target:  5'- aUGGCGCUGUUCacgACCcucGGCGucacgcgcGCCCCg -3'
miRNA:   3'- gACUGCGGCAAGa--UGG---UCGU--------CGGGGg -5'
29639 3' -57.8 NC_006151.1 + 124543 0.68 0.718658
Target:  5'- -cGGCGCCGcgggcUUCUACCacacgGGCA-CCUCCg -3'
miRNA:   3'- gaCUGCGGC-----AAGAUGG-----UCGUcGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 126432 0.68 0.718658
Target:  5'- -cGcCGCCGgcaCUACCAGC-GCCUCg -3'
miRNA:   3'- gaCuGCGGCaa-GAUGGUCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 87612 0.68 0.718658
Target:  5'- -cGGcCGCCGUggcCUGCCAGCgcGGCgCCg -3'
miRNA:   3'- gaCU-GCGGCAa--GAUGGUCG--UCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 37625 0.68 0.727478
Target:  5'- --aGCGCUucaaccaGUUCUGCCAGCGccggguccacgcGCCCCa -3'
miRNA:   3'- gacUGCGG-------CAAGAUGGUCGU------------CGGGGg -5'
29639 3' -57.8 NC_006151.1 + 61645 0.68 0.727478
Target:  5'- -cGGCGgCGUguggacgcGCCAGCcgcucguGGCCCCCg -3'
miRNA:   3'- gaCUGCgGCAaga-----UGGUCG-------UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 74559 0.68 0.728455
Target:  5'- cCUGGgGCUGgUUgcCCAGCGgGUCCCCg -3'
miRNA:   3'- -GACUgCGGCaAGauGGUCGU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 135710 0.68 0.728455
Target:  5'- gCUGAUGCUGcUCacgGgCAGgAGCCCUCg -3'
miRNA:   3'- -GACUGCGGCaAGa--UgGUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 68279 0.68 0.738169
Target:  5'- -cGGCGCCGggCgccaCGGCGGCCaggcgcgcgCCCa -3'
miRNA:   3'- gaCUGCGGCaaGaug-GUCGUCGG---------GGG- -5'
29639 3' -57.8 NC_006151.1 + 136615 0.68 0.738169
Target:  5'- -gGACGCCGUcaacgUCacggACCccGCGGCgCCCg -3'
miRNA:   3'- gaCUGCGGCA-----AGa---UGGu-CGUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 55900 0.68 0.718658
Target:  5'- --uGCGCCGggCgACCgAGCGGCUCCg -3'
miRNA:   3'- gacUGCGGCaaGaUGG-UCGUCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.