miRNA display CGI


Results 101 - 120 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 75453 0.69 0.688867
Target:  5'- gUGGCGCgCGUagcggUCggcgGCCGGCuugaAGaCCCCCa -3'
miRNA:   3'- gACUGCG-GCA-----AGa---UGGUCG----UC-GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 59934 0.69 0.688867
Target:  5'- --cGCGCCGUcagCggcgGCUcGCAGCCCUCg -3'
miRNA:   3'- gacUGCGGCAa--Ga---UGGuCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 40218 0.69 0.688867
Target:  5'- -gGACGCCGgcaacccCUACCuGCuGCUCCg -3'
miRNA:   3'- gaCUGCGGCaa-----GAUGGuCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 71106 0.69 0.684859
Target:  5'- -gGGCGCCGUgcgCUACCccuucuuccugcuGCAGaagcaaaagaCCCCCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGu------------CGUC----------GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 98716 0.69 0.668761
Target:  5'- -cGGCGCgCGcgCU-CguGCAGCCCCg -3'
miRNA:   3'- gaCUGCG-GCaaGAuGguCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 68338 0.7 0.577756
Target:  5'- uUGACGCgCGagUCggaGCgCAGCAGCCgCCa -3'
miRNA:   3'- gACUGCG-GCa-AGa--UG-GUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 83241 0.7 0.577756
Target:  5'- -cGGCGCgCGcccccagUCgucgcGCCAGCGGCgCCCCg -3'
miRNA:   3'- gaCUGCG-GCa------AGa----UGGUCGUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 101742 0.7 0.577756
Target:  5'- cCUGcCGCCGgac--CCGGCGGCCgCCg -3'
miRNA:   3'- -GACuGCGGCaagauGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 107530 0.7 0.577756
Target:  5'- ---cCGCCGUUggccCCGGCGGCCCCg -3'
miRNA:   3'- gacuGCGGCAAgau-GGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 68850 0.7 0.587808
Target:  5'- -aGGCGCCGcgCgacgcguCCAGCAGCgCCg -3'
miRNA:   3'- gaCUGCGGCaaGau-----GGUCGUCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 86165 0.7 0.587808
Target:  5'- gCUGACGCgCGagaUCgugGCCGccgcGCuGCCCCCg -3'
miRNA:   3'- -GACUGCG-GCa--AGa--UGGU----CGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 107706 0.7 0.608001
Target:  5'- -cGcCGCCGgcaccaagGCCGccGCGGCCCCCa -3'
miRNA:   3'- gaCuGCGGCaaga----UGGU--CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 107475 0.7 0.618127
Target:  5'- -gGugGCCagcgcgCUGCC-GCuGCCCCCg -3'
miRNA:   3'- gaCugCGGcaa---GAUGGuCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 59486 0.7 0.618127
Target:  5'- -aGGCGCCc-UCgaagagcCCGGCGGCCUCCg -3'
miRNA:   3'- gaCUGCGGcaAGau-----GGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 87165 0.7 0.618127
Target:  5'- -cGACGCCGUaCUacgcGCCcGCGGCgCCgCCg -3'
miRNA:   3'- gaCUGCGGCAaGA----UGGuCGUCG-GG-GG- -5'
29639 3' -57.8 NC_006151.1 + 120443 0.7 0.618127
Target:  5'- -cGACGCUGUUCccCCgcGGCaAGCCgCCCg -3'
miRNA:   3'- gaCUGCGGCAAGauGG--UCG-UCGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 4126 0.71 0.557772
Target:  5'- cCUGcCGCCGcUCgGCCGGgcCGGCCCCg -3'
miRNA:   3'- -GACuGCGGCaAGaUGGUC--GUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 21970 0.71 0.567742
Target:  5'- -cGGCGUgGUgCggcGCCGGCAGCgCCCa -3'
miRNA:   3'- gaCUGCGgCAaGa--UGGUCGUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 69929 0.71 0.571743
Target:  5'- -gGGCGCCGagC-GCCAGgggcagcgagacgaaCAGCCCCCc -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUC---------------GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 38386 0.71 0.53799
Target:  5'- -cGGCGCCGgcggCgGCgGGC-GCCCCCu -3'
miRNA:   3'- gaCUGCGGCaa--GaUGgUCGuCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.