miRNA display CGI


Results 121 - 140 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 86439 0.71 0.518454
Target:  5'- -cGGCGCCuggCgcCCGGCgaGGCCCCCg -3'
miRNA:   3'- gaCUGCGGcaaGauGGUCG--UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 109245 0.71 0.528188
Target:  5'- -aGcCGCCGcggUCUccGCUGGCGGCCCCg -3'
miRNA:   3'- gaCuGCGGCa--AGA--UGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 31342 0.71 0.535043
Target:  5'- -cGGCGCCGUgggcccgaccccggUCcgcGCCGGCA-CCCCCu -3'
miRNA:   3'- gaCUGCGGCA--------------AGa--UGGUCGUcGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 38386 0.71 0.53799
Target:  5'- -cGGCGCCGgcggCgGCgGGC-GCCCCCu -3'
miRNA:   3'- gaCUGCGGCaa--GaUGgUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 4126 0.71 0.557772
Target:  5'- cCUGcCGCCGcUCgGCCGGgcCGGCCCCg -3'
miRNA:   3'- -GACuGCGGCaAGaUGGUC--GUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 21970 0.71 0.567742
Target:  5'- -cGGCGUgGUgCggcGCCGGCAGCgCCCa -3'
miRNA:   3'- gaCUGCGgCAaGa--UGGUCGUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 69929 0.71 0.571743
Target:  5'- -gGGCGCCGagC-GCCAGgggcagcgagacgaaCAGCCCCCc -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUC---------------GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 87330 0.71 0.571743
Target:  5'- -cGGCGCUcccgGgcCUGCCgggccuccagggccuGGCGGCCCCCg -3'
miRNA:   3'- gaCUGCGG----CaaGAUGG---------------UCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 62014 0.72 0.470951
Target:  5'- gUGcGCGCCGccCUGgCGGcCAGCCCCCc -3'
miRNA:   3'- gAC-UGCGGCaaGAUgGUC-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 24966 0.72 0.470951
Target:  5'- aUGcGCGCCGcggcCUGCCGcGuCAGCCCCCc -3'
miRNA:   3'- gAC-UGCGGCaa--GAUGGU-C-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 2340 0.72 0.480281
Target:  5'- -cGGCGUCGggCU-CCAGCAGCgCCg -3'
miRNA:   3'- gaCUGCGGCaaGAuGGUCGUCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 100091 0.72 0.499205
Target:  5'- -aGGCGCCGgc--GCCGGCGccGCCCUCg -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGU--CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 103189 0.72 0.499205
Target:  5'- -gGACGCCGccCUGgCGGCcGCCCCg -3'
miRNA:   3'- gaCUGCGGCaaGAUgGUCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 125037 0.73 0.434594
Target:  5'- -cGACGCCa-UCUACCGGCGGCgCUa -3'
miRNA:   3'- gaCUGCGGcaAGAUGGUCGUCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 52355 0.73 0.434594
Target:  5'- -cGuCGUCGUcgUCcGCCGGCGcGCCCCCg -3'
miRNA:   3'- gaCuGCGGCA--AGaUGGUCGU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 82671 0.73 0.452574
Target:  5'- cCUGcggcGCGCCGcgggCgagGgCGGCGGCCCCCg -3'
miRNA:   3'- -GAC----UGCGGCaa--Ga--UgGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 86249 0.73 0.456218
Target:  5'- -cGGCGCCGUgcugGCCGuggucgacgacgaccGCGGCCCCUu -3'
miRNA:   3'- gaCUGCGGCAaga-UGGU---------------CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 123069 0.74 0.408419
Target:  5'- -cGACGCCGagC-GCCGGCGGCgCCUg -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUCGUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 109464 0.74 0.391526
Target:  5'- -cGACGCCGgagCggcACgGGgAGCCCCCg -3'
miRNA:   3'- gaCUGCGGCaa-Ga--UGgUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 85839 0.74 0.382431
Target:  5'- gUGGCGCUGgagCUgcagaaccGCCAGCgcgugacGGCCCCCg -3'
miRNA:   3'- gACUGCGGCaa-GA--------UGGUCG-------UCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.