Results 41 - 60 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 87165 | 0.7 | 0.618127 |
Target: 5'- -cGACGCCGUaCUacgcGCCcGCGGCgCCgCCg -3' miRNA: 3'- gaCUGCGGCAaGA----UGGuCGUCG-GG-GG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 68850 | 0.7 | 0.587808 |
Target: 5'- -aGGCGCCGcgCgacgcguCCAGCAGCgCCg -3' miRNA: 3'- gaCUGCGGCaaGau-----GGUCGUCGgGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 120443 | 0.7 | 0.618127 |
Target: 5'- -cGACGCUGUUCccCCgcGGCaAGCCgCCCg -3' miRNA: 3'- gaCUGCGGCAAGauGG--UCG-UCGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 59934 | 0.69 | 0.688867 |
Target: 5'- --cGCGCCGUcagCggcgGCUcGCAGCCCUCg -3' miRNA: 3'- gacUGCGGCAa--Ga---UGGuCGUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 87433 | 0.69 | 0.65866 |
Target: 5'- -gGugGCCGUgcccgCcGCCgccgcGGCcGCCCCCg -3' miRNA: 3'- gaCugCGGCAa----GaUGG-----UCGuCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 75453 | 0.69 | 0.688867 |
Target: 5'- gUGGCGCgCGUagcggUCggcgGCCGGCuugaAGaCCCCCa -3' miRNA: 3'- gACUGCG-GCA-----AGa---UGGUCG----UC-GGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 71106 | 0.69 | 0.684859 |
Target: 5'- -gGGCGCCGUgcgCUACCccuucuuccugcuGCAGaagcaaaagaCCCCCg -3' miRNA: 3'- gaCUGCGGCAa--GAUGGu------------CGUC----------GGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 97686 | 0.69 | 0.654613 |
Target: 5'- gUGACGCUGgccagccggUCUugcgucacguggcCCAGgAGCCCCCc -3' miRNA: 3'- gACUGCGGCa--------AGAu------------GGUCgUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 107348 | 0.69 | 0.638404 |
Target: 5'- -cGACGCCcacccgGCCcGCGGCCCCg -3' miRNA: 3'- gaCUGCGGcaaga-UGGuCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 46807 | 0.69 | 0.638404 |
Target: 5'- -cGGCGcCCGUcgcccUCUGCCucu-GCCCCCg -3' miRNA: 3'- gaCUGC-GGCA-----AGAUGGucguCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 90984 | 0.69 | 0.648538 |
Target: 5'- cCUGGCGCCGcuggCUggcgcgcuccaGCaCGGCGGUCCCg -3' miRNA: 3'- -GACUGCGGCaa--GA-----------UG-GUCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 92564 | 0.69 | 0.65866 |
Target: 5'- -gGugGCCGagUCgcuggaggGCCgcgaGGUGGCCCCCg -3' miRNA: 3'- gaCugCGGCa-AGa-------UGG----UCGUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 118965 | 0.69 | 0.647525 |
Target: 5'- -aGGCGCuCGUcgCcGCCGGCguguacgacgaggAGCCCCCc -3' miRNA: 3'- gaCUGCG-GCAa-GaUGGUCG-------------UCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 98716 | 0.69 | 0.668761 |
Target: 5'- -cGGCGCgCGcgCU-CguGCAGCCCCg -3' miRNA: 3'- gaCUGCG-GCaaGAuGguCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 40218 | 0.69 | 0.688867 |
Target: 5'- -gGACGCCGgcaacccCUACCuGCuGCUCCg -3' miRNA: 3'- gaCUGCGGCaa-----GAUGGuCGuCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 48817 | 0.68 | 0.708788 |
Target: 5'- -gGACGCC-UUCgccGCCGaguucgacGUGGCCCCCu -3' miRNA: 3'- gaCUGCGGcAAGa--UGGU--------CGUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 67822 | 0.68 | 0.698855 |
Target: 5'- gCUGcCGCCGUcgUCgucgcggggGCuCAGCAGCCCg- -3' miRNA: 3'- -GACuGCGGCA--AGa--------UG-GUCGUCGGGgg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 24674 | 0.68 | 0.698855 |
Target: 5'- -cGGCGUCGcgCauguCCAGCGGCCcguCCCg -3' miRNA: 3'- gaCUGCGGCaaGau--GGUCGUCGG---GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 17959 | 0.68 | 0.698855 |
Target: 5'- -cGGCGCCcgcCUGCCGGC-GUCCCa -3' miRNA: 3'- gaCUGCGGcaaGAUGGUCGuCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 137768 | 0.68 | 0.698855 |
Target: 5'- cCUGGCGCgCGUgCU-CCAGCAGgCCg- -3' miRNA: 3'- -GACUGCG-GCAaGAuGGUCGUCgGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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