miRNA display CGI


Results 101 - 120 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 118894 0.67 0.776033
Target:  5'- -cGACGCgGcc--GCCGGCGGCCUCg -3'
miRNA:   3'- gaCUGCGgCaagaUGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 72877 0.67 0.776033
Target:  5'- -cGGCGcCCGUgucggCgaugaGCCGcGcCAGCCCCCg -3'
miRNA:   3'- gaCUGC-GGCAa----Ga----UGGU-C-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 39664 0.67 0.776033
Target:  5'- gCUGcCGCCGcgCgccuaccGCCAGCGcguGCuCCCCa -3'
miRNA:   3'- -GACuGCGGCaaGa------UGGUCGU---CG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 99849 0.66 0.83711
Target:  5'- -cGACGCCuacaaCUGCCuccuGaCGGCCUCCu -3'
miRNA:   3'- gaCUGCGGcaa--GAUGGu---C-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 33196 0.66 0.845165
Target:  5'- -gGAUgGCCG----GCCGGC-GCCCCCg -3'
miRNA:   3'- gaCUG-CGGCaagaUGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 4691 0.66 0.845165
Target:  5'- -gGACaugGCC--UC-GCCGGCGGCCCCg -3'
miRNA:   3'- gaCUG---CGGcaAGaUGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 73101 0.66 0.83711
Target:  5'- ---uCGCCGUgcacCUcGCCGGCGGCgCgCCCg -3'
miRNA:   3'- gacuGCGGCAa---GA-UGGUCGUCG-G-GGG- -5'
29639 3' -57.8 NC_006151.1 + 50878 0.66 0.83711
Target:  5'- -gGACcCCGUccCgggGCCGGCcgcGCCCCCc -3'
miRNA:   3'- gaCUGcGGCAa-Ga--UGGUCGu--CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 3487 0.66 0.83711
Target:  5'- -gGGCGCCGga--GCCGGUcGUCCUCg -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 18717 0.66 0.834657
Target:  5'- gUGACGCCGUccacguagaucgcgUCgucGCCGccGCcggGGCCCCa -3'
miRNA:   3'- gACUGCGGCA--------------AGa--UGGU--CG---UCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 74655 0.66 0.828872
Target:  5'- -cGGCGCaGUcCU-CgGGCAGCuCCCCg -3'
miRNA:   3'- gaCUGCGgCAaGAuGgUCGUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 24519 0.66 0.820458
Target:  5'- -gGGCGCCGccacgUUGCagcgcGCGGCCCCg -3'
miRNA:   3'- gaCUGCGGCaa---GAUGgu---CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 137012 0.66 0.826366
Target:  5'- -cGGCGCUGggcgcccugcucggcCUGCCGGacgcguGCCCCCc -3'
miRNA:   3'- gaCUGCGGCaa-------------GAUGGUCgu----CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 134390 0.66 0.823844
Target:  5'- -gGACGCCGgauacgacaucccCUGCCcGCGcgagcuggugcuGCCCCCc -3'
miRNA:   3'- gaCUGCGGCaa-----------GAUGGuCGU------------CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 123856 0.66 0.823844
Target:  5'- -gGGCGCCGUcgcgcuagcgCUGCUGcugcuggcgcucgccGCGGCCCCg -3'
miRNA:   3'- gaCUGCGGCAa---------GAUGGU---------------CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 36811 0.66 0.820458
Target:  5'- -cGuCGCCGUcgagaccgUC-GCCcGCGGCCCCg -3'
miRNA:   3'- gaCuGCGGCA--------AGaUGGuCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 5730 0.66 0.820458
Target:  5'- gUGGCGCCGgggUCcgagGCCGcGCcGCCggCCCg -3'
miRNA:   3'- gACUGCGGCa--AGa---UGGU-CGuCGG--GGG- -5'
29639 3' -57.8 NC_006151.1 + 63539 0.66 0.803135
Target:  5'- -aGACGCCGgcg-ACCAcGUAGCUCUg -3'
miRNA:   3'- gaCUGCGGCaagaUGGU-CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 136236 0.66 0.803135
Target:  5'- -aGACGCUGgugCUgGCCAcGC-GCCUCCa -3'
miRNA:   3'- gaCUGCGGCaa-GA-UGGU-CGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 91493 0.66 0.820458
Target:  5'- -cGcACGCUGgcgugC-ACCAGCAGCCCggCCu -3'
miRNA:   3'- gaC-UGCGGCaa---GaUGGUCGUCGGG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.