Results 61 - 80 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 137768 | 0.68 | 0.698855 |
Target: 5'- cCUGGCGCgCGUgCU-CCAGCAGgCCg- -3' miRNA: 3'- -GACUGCG-GCAaGAuGGUCGUCgGGgg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 68979 | 0.68 | 0.708788 |
Target: 5'- -gGACGCCG----GCCAGCAGCgCgCg -3' miRNA: 3'- gaCUGCGGCaagaUGGUCGUCGgGgG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 109516 | 0.68 | 0.708788 |
Target: 5'- gCUGcCGCCGcagccgUCU--CAGCAGCgCCCCc -3' miRNA: 3'- -GACuGCGGCa-----AGAugGUCGUCG-GGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 72393 | 0.68 | 0.708788 |
Target: 5'- gUGcCGCCGcagcgUCUccagaaacACCAcGCGGCCCUCg -3' miRNA: 3'- gACuGCGGCa----AGA--------UGGU-CGUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 48817 | 0.68 | 0.708788 |
Target: 5'- -gGACGCC-UUCgccGCCGaguucgacGUGGCCCCCu -3' miRNA: 3'- gaCUGCGGcAAGa--UGGU--------CGUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 139102 | 0.68 | 0.718658 |
Target: 5'- aUGGCGCUGUUCacgACCcucGGCGucacgcgcGCCCCg -3' miRNA: 3'- gACUGCGGCAAGa--UGG---UCGU--------CGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 55900 | 0.68 | 0.718658 |
Target: 5'- --uGCGCCGggCgACCgAGCGGCUCCg -3' miRNA: 3'- gacUGCGGCaaGaUGG-UCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 124543 | 0.68 | 0.718658 |
Target: 5'- -cGGCGCCGcgggcUUCUACCacacgGGCA-CCUCCg -3' miRNA: 3'- gaCUGCGGC-----AAGAUGG-----UCGUcGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 126432 | 0.68 | 0.718658 |
Target: 5'- -cGcCGCCGgcaCUACCAGC-GCCUCg -3' miRNA: 3'- gaCuGCGGCaa-GAUGGUCGuCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 87612 | 0.68 | 0.718658 |
Target: 5'- -cGGcCGCCGUggcCUGCCAGCgcGGCgCCg -3' miRNA: 3'- gaCU-GCGGCAa--GAUGGUCG--UCGgGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 4825 | 0.68 | 0.718658 |
Target: 5'- -gGACGUCGUccUCgucCCAG-AGCCCCUc -3' miRNA: 3'- gaCUGCGGCA--AGau-GGUCgUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 39316 | 0.68 | 0.718658 |
Target: 5'- -cGGCGCCGUggaguaccUCUGCUcGCGGCUCg- -3' miRNA: 3'- gaCUGCGGCA--------AGAUGGuCGUCGGGgg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 61645 | 0.68 | 0.727478 |
Target: 5'- -cGGCGgCGUguggacgcGCCAGCcgcucguGGCCCCCg -3' miRNA: 3'- gaCUGCgGCAaga-----UGGUCG-------UCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 37625 | 0.68 | 0.727478 |
Target: 5'- --aGCGCUucaaccaGUUCUGCCAGCGccggguccacgcGCCCCa -3' miRNA: 3'- gacUGCGG-------CAAGAUGGUCGU------------CGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 135710 | 0.68 | 0.728455 |
Target: 5'- gCUGAUGCUGcUCacgGgCAGgAGCCCUCg -3' miRNA: 3'- -GACUGCGGCaAGa--UgGUCgUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 74559 | 0.68 | 0.728455 |
Target: 5'- cCUGGgGCUGgUUgcCCAGCGgGUCCCCg -3' miRNA: 3'- -GACUgCGGCaAGauGGUCGU-CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 68279 | 0.68 | 0.738169 |
Target: 5'- -cGGCGCCGggCgccaCGGCGGCCaggcgcgcgCCCa -3' miRNA: 3'- gaCUGCGGCaaGaug-GUCGUCGG---------GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 136615 | 0.68 | 0.738169 |
Target: 5'- -gGACGCCGUcaacgUCacggACCccGCGGCgCCCg -3' miRNA: 3'- gaCUGCGGCA-----AGa---UGGu-CGUCGgGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 92648 | 0.68 | 0.742031 |
Target: 5'- -cGACGCCGgcaaggcgcucgcccUgCUGCCGGCGGCCg-- -3' miRNA: 3'- gaCUGCGGC---------------AaGAUGGUCGUCGGggg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 69469 | 0.67 | 0.747794 |
Target: 5'- -gGGCGCCGgcaccgUCgccGCCgccucgAGC-GCCCCCg -3' miRNA: 3'- gaCUGCGGCa-----AGa--UGG------UCGuCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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