miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 126432 0.68 0.718658
Target:  5'- -cGcCGCCGgcaCUACCAGC-GCCUCg -3'
miRNA:   3'- gaCuGCGGCaa-GAUGGUCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 124543 0.68 0.718658
Target:  5'- -cGGCGCCGcgggcUUCUACCacacgGGCA-CCUCCg -3'
miRNA:   3'- gaCUGCGGC-----AAGAUGG-----UCGUcGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 139102 0.68 0.718658
Target:  5'- aUGGCGCUGUUCacgACCcucGGCGucacgcgcGCCCCg -3'
miRNA:   3'- gACUGCGGCAAGa--UGG---UCGU--------CGGGGg -5'
29639 3' -57.8 NC_006151.1 + 48817 0.68 0.708788
Target:  5'- -gGACGCC-UUCgccGCCGaguucgacGUGGCCCCCu -3'
miRNA:   3'- gaCUGCGGcAAGa--UGGU--------CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 68979 0.68 0.708788
Target:  5'- -gGACGCCG----GCCAGCAGCgCgCg -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGUCGgGgG- -5'
29639 3' -57.8 NC_006151.1 + 72393 0.68 0.708788
Target:  5'- gUGcCGCCGcagcgUCUccagaaacACCAcGCGGCCCUCg -3'
miRNA:   3'- gACuGCGGCa----AGA--------UGGU-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 109516 0.68 0.708788
Target:  5'- gCUGcCGCCGcagccgUCU--CAGCAGCgCCCCc -3'
miRNA:   3'- -GACuGCGGCa-----AGAugGUCGUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 67822 0.68 0.698855
Target:  5'- gCUGcCGCCGUcgUCgucgcggggGCuCAGCAGCCCg- -3'
miRNA:   3'- -GACuGCGGCA--AGa--------UG-GUCGUCGGGgg -5'
29639 3' -57.8 NC_006151.1 + 17959 0.68 0.698855
Target:  5'- -cGGCGCCcgcCUGCCGGC-GUCCCa -3'
miRNA:   3'- gaCUGCGGcaaGAUGGUCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 24674 0.68 0.698855
Target:  5'- -cGGCGUCGcgCauguCCAGCGGCCcguCCCg -3'
miRNA:   3'- gaCUGCGGCaaGau--GGUCGUCGG---GGG- -5'
29639 3' -57.8 NC_006151.1 + 52044 0.68 0.698855
Target:  5'- -cGGCGCCGUcgCgUGCguGUAGCCCa- -3'
miRNA:   3'- gaCUGCGGCAa-G-AUGguCGUCGGGgg -5'
29639 3' -57.8 NC_006151.1 + 106998 0.68 0.698855
Target:  5'- cCUGGCGCCGca--GCUggAGCGGCUCUCg -3'
miRNA:   3'- -GACUGCGGCaagaUGG--UCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 137768 0.68 0.698855
Target:  5'- cCUGGCGCgCGUgCU-CCAGCAGgCCg- -3'
miRNA:   3'- -GACUGCG-GCAaGAuGGUCGUCgGGgg -5'
29639 3' -57.8 NC_006151.1 + 40218 0.69 0.688867
Target:  5'- -gGACGCCGgcaacccCUACCuGCuGCUCCg -3'
miRNA:   3'- gaCUGCGGCaa-----GAUGGuCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 59934 0.69 0.688867
Target:  5'- --cGCGCCGUcagCggcgGCUcGCAGCCCUCg -3'
miRNA:   3'- gacUGCGGCAa--Ga---UGGuCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 75453 0.69 0.688867
Target:  5'- gUGGCGCgCGUagcggUCggcgGCCGGCuugaAGaCCCCCa -3'
miRNA:   3'- gACUGCG-GCA-----AGa---UGGUCG----UC-GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 71106 0.69 0.684859
Target:  5'- -gGGCGCCGUgcgCUACCccuucuuccugcuGCAGaagcaaaagaCCCCCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGu------------CGUC----------GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 98716 0.69 0.668761
Target:  5'- -cGGCGCgCGcgCU-CguGCAGCCCCg -3'
miRNA:   3'- gaCUGCG-GCaaGAuGguCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 92564 0.69 0.65866
Target:  5'- -gGugGCCGagUCgcuggaggGCCgcgaGGUGGCCCCCg -3'
miRNA:   3'- gaCugCGGCa-AGa-------UGG----UCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 87433 0.69 0.65866
Target:  5'- -gGugGCCGUgcccgCcGCCgccgcGGCcGCCCCCg -3'
miRNA:   3'- gaCugCGGCAa----GaUGG-----UCGuCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.