miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 68979 0.68 0.708788
Target:  5'- -gGACGCCG----GCCAGCAGCgCgCg -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGUCGgGgG- -5'
29639 3' -57.8 NC_006151.1 + 69469 0.67 0.747794
Target:  5'- -gGGCGCCGgcaccgUCgccGCCgccucgAGC-GCCCCCg -3'
miRNA:   3'- gaCUGCGGCa-----AGa--UGG------UCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 69929 0.71 0.571743
Target:  5'- -gGGCGCCGagC-GCCAGgggcagcgagacgaaCAGCCCCCc -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUC---------------GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 70636 0.66 0.803135
Target:  5'- -cGGCGCCGUg--GCCGcGCgcgaGGCgCCCg -3'
miRNA:   3'- gaCUGCGGCAagaUGGU-CG----UCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 71106 0.69 0.684859
Target:  5'- -gGGCGCCGUgcgCUACCccuucuuccugcuGCAGaagcaaaagaCCCCCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGu------------CGUC----------GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 72393 0.68 0.708788
Target:  5'- gUGcCGCCGcagcgUCUccagaaacACCAcGCGGCCCUCg -3'
miRNA:   3'- gACuGCGGCa----AGA--------UGGU-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 72877 0.67 0.776033
Target:  5'- -cGGCGcCCGUgucggCgaugaGCCGcGcCAGCCCCCg -3'
miRNA:   3'- gaCUGC-GGCAa----Ga----UGGU-C-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 73101 0.66 0.83711
Target:  5'- ---uCGCCGUgcacCUcGCCGGCGGCgCgCCCg -3'
miRNA:   3'- gacuGCGGCAa---GA-UGGUCGUCG-G-GGG- -5'
29639 3' -57.8 NC_006151.1 + 73443 0.67 0.775108
Target:  5'- uUGGCGCggggcugCGUgagCUGCagguGCAGCCCgCCg -3'
miRNA:   3'- gACUGCG-------GCAa--GAUGgu--CGUCGGG-GG- -5'
29639 3' -57.8 NC_006151.1 + 74559 0.68 0.728455
Target:  5'- cCUGGgGCUGgUUgcCCAGCGgGUCCCCg -3'
miRNA:   3'- -GACUgCGGCaAGauGGUCGU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 74655 0.66 0.828872
Target:  5'- -cGGCGCaGUcCU-CgGGCAGCuCCCCg -3'
miRNA:   3'- gaCUGCGgCAaGAuGgUCGUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 74867 0.66 0.803135
Target:  5'- -aGGCGCCGcgC-ACC-GCGGCCaCCg -3'
miRNA:   3'- gaCUGCGGCaaGaUGGuCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 75453 0.69 0.688867
Target:  5'- gUGGCGCgCGUagcggUCggcgGCCGGCuugaAGaCCCCCa -3'
miRNA:   3'- gACUGCG-GCA-----AGa---UGGUCG----UC-GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 76870 0.67 0.757318
Target:  5'- --cGCGCCGcc--GCCAGgAGCCCCa -3'
miRNA:   3'- gacUGCGGCaagaUGGUCgUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 78779 0.66 0.811877
Target:  5'- cCUGAcCGCC-UUCggcgacucGCCcGCGGCCCuCCg -3'
miRNA:   3'- -GACU-GCGGcAAGa-------UGGuCGUCGGG-GG- -5'
29639 3' -57.8 NC_006151.1 + 81219 0.66 0.803135
Target:  5'- -gGGCGCCGgcgCgugaacacgaaGCUGGC-GCCCCCg -3'
miRNA:   3'- gaCUGCGGCaa-Ga----------UGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 82671 0.73 0.452574
Target:  5'- cCUGcggcGCGCCGcgggCgagGgCGGCGGCCCCCg -3'
miRNA:   3'- -GAC----UGCGGCaa--Ga--UgGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 83241 0.7 0.577756
Target:  5'- -cGGCGCgCGcccccagUCgucgcGCCAGCGGCgCCCCg -3'
miRNA:   3'- gaCUGCG-GCa------AGa----UGGUCGUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 83549 0.66 0.845165
Target:  5'- -aGACGaCCGUcaUCU-CgGGCGGgCCCUCg -3'
miRNA:   3'- gaCUGC-GGCA--AGAuGgUCGUC-GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 85839 0.74 0.382431
Target:  5'- gUGGCGCUGgagCUgcagaaccGCCAGCgcgugacGGCCCCCg -3'
miRNA:   3'- gACUGCGGCaa-GA--------UGGUCG-------UCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.