miRNA display CGI


Results 101 - 120 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 97686 0.69 0.654613
Target:  5'- gUGACGCUGgccagccggUCUugcgucacguggcCCAGgAGCCCCCc -3'
miRNA:   3'- gACUGCGGCa--------AGAu------------GGUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 98716 0.69 0.668761
Target:  5'- -cGGCGCgCGcgCU-CguGCAGCCCCg -3'
miRNA:   3'- gaCUGCG-GCaaGAuGguCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 99344 0.66 0.828872
Target:  5'- --cGCGCCGUcggCUGCaCGGCGGUCgUCg -3'
miRNA:   3'- gacUGCGGCAa--GAUG-GUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 99849 0.66 0.83711
Target:  5'- -cGACGCCuacaaCUGCCuccuGaCGGCCUCCu -3'
miRNA:   3'- gaCUGCGGcaa--GAUGGu---C-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 100091 0.72 0.499205
Target:  5'- -aGGCGCCGgc--GCCGGCGccGCCCUCg -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGU--CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 101742 0.7 0.577756
Target:  5'- cCUGcCGCCGgac--CCGGCGGCCgCCg -3'
miRNA:   3'- -GACuGCGGCaagauGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 102676 0.71 0.528188
Target:  5'- uUGACGCCGUgg-ACgCGGgGGCgCCCg -3'
miRNA:   3'- gACUGCGGCAagaUG-GUCgUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 102898 0.67 0.794242
Target:  5'- cCUG-CGCCGccucgUCgacucGCUGGCGGCCgCCg -3'
miRNA:   3'- -GACuGCGGCa----AGa----UGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 103189 0.72 0.499205
Target:  5'- -gGACGCCGccCUGgCGGCcGCCCCg -3'
miRNA:   3'- gaCUGCGGCaaGAUgGUCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 104727 0.67 0.794242
Target:  5'- -cGGCGCCGUgacCUACCuGgAGCgCUUCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGuCgUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 105392 0.75 0.359136
Target:  5'- -cGACGCCG-UCUACCcGCGccuGCCCgCCa -3'
miRNA:   3'- gaCUGCGGCaAGAUGGuCGU---CGGG-GG- -5'
29639 3' -57.8 NC_006151.1 + 105560 0.66 0.828872
Target:  5'- -cGACGCCcugCgcgcGCUGGCGGCCgCCu -3'
miRNA:   3'- gaCUGCGGcaaGa---UGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 106885 0.66 0.811877
Target:  5'- gUGACGCUGUgcgACCuGCGcGaCCCCg -3'
miRNA:   3'- gACUGCGGCAagaUGGuCGU-CgGGGG- -5'
29639 3' -57.8 NC_006151.1 + 106998 0.68 0.698855
Target:  5'- cCUGGCGCCGca--GCUggAGCGGCUCUCg -3'
miRNA:   3'- -GACUGCGGCaagaUGG--UCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 107024 0.67 0.776033
Target:  5'- -cGGCGCUGaUC-GCgGcGCGGCCCCUg -3'
miRNA:   3'- gaCUGCGGCaAGaUGgU-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 107348 0.69 0.638404
Target:  5'- -cGACGCCcacccgGCCcGCGGCCCCg -3'
miRNA:   3'- gaCUGCGGcaaga-UGGuCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 107475 0.7 0.618127
Target:  5'- -gGugGCCagcgcgCUGCC-GCuGCCCCCg -3'
miRNA:   3'- gaCugCGGcaa---GAUGGuCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 107530 0.7 0.577756
Target:  5'- ---cCGCCGUUggccCCGGCGGCCCCg -3'
miRNA:   3'- gacuGCGGCAAgau-GGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 107706 0.7 0.608001
Target:  5'- -cGcCGCCGgcaccaagGCCGccGCGGCCCCCa -3'
miRNA:   3'- gaCuGCGGCaaga----UGGU--CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 109245 0.71 0.528188
Target:  5'- -aGcCGCCGcggUCUccGCUGGCGGCCCCg -3'
miRNA:   3'- gaCuGCGGCa--AGA--UGGUCGUCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.