Results 121 - 140 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 109464 | 0.74 | 0.391526 |
Target: 5'- -cGACGCCGgagCggcACgGGgAGCCCCCg -3' miRNA: 3'- gaCUGCGGCaa-Ga--UGgUCgUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 109516 | 0.68 | 0.708788 |
Target: 5'- gCUGcCGCCGcagccgUCU--CAGCAGCgCCCCc -3' miRNA: 3'- -GACuGCGGCa-----AGAugGUCGUCG-GGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 109817 | 0.66 | 0.83711 |
Target: 5'- -cGGCcCCGcgCUccccGCUGGCGGaCCCCCa -3' miRNA: 3'- gaCUGcGGCaaGA----UGGUCGUC-GGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 111382 | 0.67 | 0.794242 |
Target: 5'- ---uCGCCGUcgUCgccgccGCCGGCA-CCCCCg -3' miRNA: 3'- gacuGCGGCA--AGa-----UGGUCGUcGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 112710 | 0.66 | 0.811877 |
Target: 5'- -cGGCGCUGUgcgCcaagGCCcuGGCcuGCCCCCc -3' miRNA: 3'- gaCUGCGGCAa--Ga---UGG--UCGu-CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 118894 | 0.67 | 0.776033 |
Target: 5'- -cGACGCgGcc--GCCGGCGGCCUCg -3' miRNA: 3'- gaCUGCGgCaagaUGGUCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 118965 | 0.69 | 0.647525 |
Target: 5'- -aGGCGCuCGUcgCcGCCGGCguguacgacgaggAGCCCCCc -3' miRNA: 3'- gaCUGCG-GCAa-GaUGGUCG-------------UCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 119467 | 0.79 | 0.18588 |
Target: 5'- -gGACGCCGUgcgCUacgugGCCGGCAGCCUCg -3' miRNA: 3'- gaCUGCGGCAa--GA-----UGGUCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 120443 | 0.7 | 0.618127 |
Target: 5'- -cGACGCUGUUCccCCgcGGCaAGCCgCCCg -3' miRNA: 3'- gaCUGCGGCAAGauGG--UCG-UCGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 122074 | 0.66 | 0.83711 |
Target: 5'- -cGACGCCGagaacCUGCUcaAGCAGCUCa- -3' miRNA: 3'- gaCUGCGGCaa---GAUGG--UCGUCGGGgg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 122970 | 0.66 | 0.830534 |
Target: 5'- -gGACGCCGgcgacgggggcgUCggcgacgaagacggGcCCGGCGcGCCCCCg -3' miRNA: 3'- gaCUGCGGCa-----------AGa-------------U-GGUCGU-CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 123069 | 0.74 | 0.408419 |
Target: 5'- -cGACGCCGagC-GCCGGCGGCgCCUg -3' miRNA: 3'- gaCUGCGGCaaGaUGGUCGUCGgGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 123244 | 0.66 | 0.845165 |
Target: 5'- -cGGCGCgCGUUCUGCgAG--GCCgCCg -3' miRNA: 3'- gaCUGCG-GCAAGAUGgUCguCGGgGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 123856 | 0.66 | 0.823844 |
Target: 5'- -gGGCGCCGUcgcgcuagcgCUGCUGcugcuggcgcucgccGCGGCCCCg -3' miRNA: 3'- gaCUGCGGCAa---------GAUGGU---------------CGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 124543 | 0.68 | 0.718658 |
Target: 5'- -cGGCGCCGcgggcUUCUACCacacgGGCA-CCUCCg -3' miRNA: 3'- gaCUGCGGC-----AAGAUGG-----UCGUcGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 125037 | 0.73 | 0.434594 |
Target: 5'- -cGACGCCa-UCUACCGGCGGCgCUa -3' miRNA: 3'- gaCUGCGGcaAGAUGGUCGUCGgGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 125199 | 0.76 | 0.280045 |
Target: 5'- -cGGCGUCGUgg-GCCccGCGGCCCCCg -3' miRNA: 3'- gaCUGCGGCAagaUGGu-CGUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 126432 | 0.68 | 0.718658 |
Target: 5'- -cGcCGCCGgcaCUACCAGC-GCCUCg -3' miRNA: 3'- gaCuGCGGCaa-GAUGGUCGuCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 133646 | 0.67 | 0.788836 |
Target: 5'- -gGugGuCCGggugcgagaggcgCUGCCGGCGcggcggcgcGCCCCCg -3' miRNA: 3'- gaCugC-GGCaa-----------GAUGGUCGU---------CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 134390 | 0.66 | 0.823844 |
Target: 5'- -gGACGCCGgauacgacaucccCUGCCcGCGcgagcuggugcuGCCCCCc -3' miRNA: 3'- gaCUGCGGCaa-----------GAUGGuCGU------------CGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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