miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 102898 0.67 0.794242
Target:  5'- cCUG-CGCCGccucgUCgacucGCUGGCGGCCgCCg -3'
miRNA:   3'- -GACuGCGGCa----AGa----UGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 102676 0.71 0.528188
Target:  5'- uUGACGCCGUgg-ACgCGGgGGCgCCCg -3'
miRNA:   3'- gACUGCGGCAagaUG-GUCgUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 101742 0.7 0.577756
Target:  5'- cCUGcCGCCGgac--CCGGCGGCCgCCg -3'
miRNA:   3'- -GACuGCGGCaagauGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 100091 0.72 0.499205
Target:  5'- -aGGCGCCGgc--GCCGGCGccGCCCUCg -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGU--CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 99849 0.66 0.83711
Target:  5'- -cGACGCCuacaaCUGCCuccuGaCGGCCUCCu -3'
miRNA:   3'- gaCUGCGGcaa--GAUGGu---C-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 99344 0.66 0.828872
Target:  5'- --cGCGCCGUcggCUGCaCGGCGGUCgUCg -3'
miRNA:   3'- gacUGCGGCAa--GAUG-GUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 98716 0.69 0.668761
Target:  5'- -cGGCGCgCGcgCU-CguGCAGCCCCg -3'
miRNA:   3'- gaCUGCG-GCaaGAuGguCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 97686 0.69 0.654613
Target:  5'- gUGACGCUGgccagccggUCUugcgucacguggcCCAGgAGCCCCCc -3'
miRNA:   3'- gACUGCGGCa--------AGAu------------GGUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 95911 0.66 0.828872
Target:  5'- aUGAUGCCGc---GCguGCAGUCgCCCg -3'
miRNA:   3'- gACUGCGGCaagaUGguCGUCGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 95382 0.75 0.336102
Target:  5'- -aGACGCCGUUCUcGCCGggcGUGGCCCgCu -3'
miRNA:   3'- gaCUGCGGCAAGA-UGGU---CGUCGGGgG- -5'
29639 3' -57.8 NC_006151.1 + 95096 0.67 0.794242
Target:  5'- aUGACGCCGUag----AGCAGCUCCUc -3'
miRNA:   3'- gACUGCGGCAagauggUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 94275 0.66 0.803135
Target:  5'- uUGGCGUCG-UCgcCCAGCGGCaggUCCg -3'
miRNA:   3'- gACUGCGGCaAGauGGUCGUCGg--GGG- -5'
29639 3' -57.8 NC_006151.1 + 92648 0.68 0.742031
Target:  5'- -cGACGCCGgcaaggcgcucgcccUgCUGCCGGCGGCCg-- -3'
miRNA:   3'- gaCUGCGGC---------------AaGAUGGUCGUCGGggg -5'
29639 3' -57.8 NC_006151.1 + 92564 0.69 0.65866
Target:  5'- -gGugGCCGagUCgcuggaggGCCgcgaGGUGGCCCCCg -3'
miRNA:   3'- gaCugCGGCa-AGa-------UGG----UCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 91493 0.66 0.820458
Target:  5'- -cGcACGCUGgcgugC-ACCAGCAGCCCggCCu -3'
miRNA:   3'- gaC-UGCGGCaa---GaUGGUCGUCGGG--GG- -5'
29639 3' -57.8 NC_006151.1 + 90984 0.69 0.648538
Target:  5'- cCUGGCGCCGcuggCUggcgcgcuccaGCaCGGCGGUCCCg -3'
miRNA:   3'- -GACUGCGGCaa--GA-----------UG-GUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 90221 0.66 0.827203
Target:  5'- -gGACGCCGgccgagaucgcgUCgcgGCUGGcCAGCgCCCa -3'
miRNA:   3'- gaCUGCGGCa-----------AGa--UGGUC-GUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 90014 0.66 0.83711
Target:  5'- -cGACGuuGUUCgugGCgcacgugaCGGcCAGCCCCa -3'
miRNA:   3'- gaCUGCggCAAGa--UG--------GUC-GUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 87612 0.68 0.718658
Target:  5'- -cGGcCGCCGUggcCUGCCAGCgcGGCgCCg -3'
miRNA:   3'- gaCU-GCGGCAa--GAUGGUCG--UCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 87433 0.69 0.65866
Target:  5'- -gGugGCCGUgcccgCcGCCgccgcGGCcGCCCCCg -3'
miRNA:   3'- gaCugCGGCAa----GaUGG-----UCGuCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.