miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 87330 0.71 0.571743
Target:  5'- -cGGCGCUcccgGgcCUGCCgggccuccagggccuGGCGGCCCCCg -3'
miRNA:   3'- gaCUGCGG----CaaGAUGG---------------UCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 87165 0.7 0.618127
Target:  5'- -cGACGCCGUaCUacgcGCCcGCGGCgCCgCCg -3'
miRNA:   3'- gaCUGCGGCAaGA----UGGuCGUCG-GG-GG- -5'
29639 3' -57.8 NC_006151.1 + 86818 0.67 0.756371
Target:  5'- -cGGCGCCcggcccaGUgcgGCCauGGCAGCCCCg -3'
miRNA:   3'- gaCUGCGG-------CAagaUGG--UCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 86556 0.78 0.237317
Target:  5'- gUGGCGCCGUU---CCGGCAGCUCUCg -3'
miRNA:   3'- gACUGCGGCAAgauGGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 86439 0.71 0.518454
Target:  5'- -cGGCGCCuggCgcCCGGCgaGGCCCCCg -3'
miRNA:   3'- gaCUGCGGcaaGauGGUCG--UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 86297 0.66 0.817901
Target:  5'- -cGGCGUCGUcaaCUGCCcGCAGCUgggggccgugcucgCCCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGuCGUCGG--------------GGG- -5'
29639 3' -57.8 NC_006151.1 + 86249 0.73 0.456218
Target:  5'- -cGGCGCCGUgcugGCCGuggucgacgacgaccGCGGCCCCUu -3'
miRNA:   3'- gaCUGCGGCAaga-UGGU---------------CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 86165 0.7 0.587808
Target:  5'- gCUGACGCgCGagaUCgugGCCGccgcGCuGCCCCCg -3'
miRNA:   3'- -GACUGCG-GCa--AGa--UGGU----CGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 85839 0.74 0.382431
Target:  5'- gUGGCGCUGgagCUgcagaaccGCCAGCgcgugacGGCCCCCg -3'
miRNA:   3'- gACUGCGGCaa-GA--------UGGUCG-------UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 83549 0.66 0.845165
Target:  5'- -aGACGaCCGUcaUCU-CgGGCGGgCCCUCg -3'
miRNA:   3'- gaCUGC-GGCA--AGAuGgUCGUC-GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 83241 0.7 0.577756
Target:  5'- -cGGCGCgCGcccccagUCgucgcGCCAGCGGCgCCCCg -3'
miRNA:   3'- gaCUGCG-GCa------AGa----UGGUCGUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 82671 0.73 0.452574
Target:  5'- cCUGcggcGCGCCGcgggCgagGgCGGCGGCCCCCg -3'
miRNA:   3'- -GAC----UGCGGCaa--Ga--UgGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 81219 0.66 0.803135
Target:  5'- -gGGCGCCGgcgCgugaacacgaaGCUGGC-GCCCCCg -3'
miRNA:   3'- gaCUGCGGCaa-Ga----------UGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 78779 0.66 0.811877
Target:  5'- cCUGAcCGCC-UUCggcgacucGCCcGCGGCCCuCCg -3'
miRNA:   3'- -GACU-GCGGcAAGa-------UGGuCGUCGGG-GG- -5'
29639 3' -57.8 NC_006151.1 + 76870 0.67 0.757318
Target:  5'- --cGCGCCGcc--GCCAGgAGCCCCa -3'
miRNA:   3'- gacUGCGGCaagaUGGUCgUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 75453 0.69 0.688867
Target:  5'- gUGGCGCgCGUagcggUCggcgGCCGGCuugaAGaCCCCCa -3'
miRNA:   3'- gACUGCG-GCA-----AGa---UGGUCG----UC-GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 74867 0.66 0.803135
Target:  5'- -aGGCGCCGcgC-ACC-GCGGCCaCCg -3'
miRNA:   3'- gaCUGCGGCaaGaUGGuCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 74655 0.66 0.828872
Target:  5'- -cGGCGCaGUcCU-CgGGCAGCuCCCCg -3'
miRNA:   3'- gaCUGCGgCAaGAuGgUCGUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 74559 0.68 0.728455
Target:  5'- cCUGGgGCUGgUUgcCCAGCGgGUCCCCg -3'
miRNA:   3'- -GACUgCGGCaAGauGGUCGU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 73443 0.67 0.775108
Target:  5'- uUGGCGCggggcugCGUgagCUGCagguGCAGCCCgCCg -3'
miRNA:   3'- gACUGCG-------GCAa--GAUGgu--CGUCGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.