miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 73101 0.66 0.83711
Target:  5'- ---uCGCCGUgcacCUcGCCGGCGGCgCgCCCg -3'
miRNA:   3'- gacuGCGGCAa---GA-UGGUCGUCG-G-GGG- -5'
29639 3' -57.8 NC_006151.1 + 72877 0.67 0.776033
Target:  5'- -cGGCGcCCGUgucggCgaugaGCCGcGcCAGCCCCCg -3'
miRNA:   3'- gaCUGC-GGCAa----Ga----UGGU-C-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 72393 0.68 0.708788
Target:  5'- gUGcCGCCGcagcgUCUccagaaacACCAcGCGGCCCUCg -3'
miRNA:   3'- gACuGCGGCa----AGA--------UGGU-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 71106 0.69 0.684859
Target:  5'- -gGGCGCCGUgcgCUACCccuucuuccugcuGCAGaagcaaaagaCCCCCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGu------------CGUC----------GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 70636 0.66 0.803135
Target:  5'- -cGGCGCCGUg--GCCGcGCgcgaGGCgCCCg -3'
miRNA:   3'- gaCUGCGGCAagaUGGU-CG----UCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 69929 0.71 0.571743
Target:  5'- -gGGCGCCGagC-GCCAGgggcagcgagacgaaCAGCCCCCc -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUC---------------GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 69469 0.67 0.747794
Target:  5'- -gGGCGCCGgcaccgUCgccGCCgccucgAGC-GCCCCCg -3'
miRNA:   3'- gaCUGCGGCa-----AGa--UGG------UCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 68979 0.68 0.708788
Target:  5'- -gGACGCCG----GCCAGCAGCgCgCg -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGUCGgGgG- -5'
29639 3' -57.8 NC_006151.1 + 68850 0.7 0.587808
Target:  5'- -aGGCGCCGcgCgacgcguCCAGCAGCgCCg -3'
miRNA:   3'- gaCUGCGGCaaGau-----GGUCGUCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 68338 0.7 0.577756
Target:  5'- uUGACGCgCGagUCggaGCgCAGCAGCCgCCa -3'
miRNA:   3'- gACUGCG-GCa-AGa--UG-GUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 68279 0.68 0.738169
Target:  5'- -cGGCGCCGggCgccaCGGCGGCCaggcgcgcgCCCa -3'
miRNA:   3'- gaCUGCGGCaaGaug-GUCGUCGG---------GGG- -5'
29639 3' -57.8 NC_006151.1 + 67822 0.68 0.698855
Target:  5'- gCUGcCGCCGUcgUCgucgcggggGCuCAGCAGCCCg- -3'
miRNA:   3'- -GACuGCGGCA--AGa--------UG-GUCGUCGGGgg -5'
29639 3' -57.8 NC_006151.1 + 64616 0.71 0.528188
Target:  5'- -cGGCGCCGcgCcGCCGGCcgcggggcgcGGCgCCCCg -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUCG----------UCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 63539 0.66 0.803135
Target:  5'- -aGACGCCGgcg-ACCAcGUAGCUCUg -3'
miRNA:   3'- gaCUGCGGCaagaUGGU-CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 62014 0.72 0.470951
Target:  5'- gUGcGCGCCGccCUGgCGGcCAGCCCCCc -3'
miRNA:   3'- gAC-UGCGGCaaGAUgGUC-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 61645 0.68 0.727478
Target:  5'- -cGGCGgCGUguggacgcGCCAGCcgcucguGGCCCCCg -3'
miRNA:   3'- gaCUGCgGCAaga-----UGGUCG-------UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 60797 0.67 0.757318
Target:  5'- gUGcACGCUGggCUcGCCGcGCAGCUCCa -3'
miRNA:   3'- gAC-UGCGGCaaGA-UGGU-CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 59934 0.69 0.688867
Target:  5'- --cGCGCCGUcagCggcgGCUcGCAGCCCUCg -3'
miRNA:   3'- gacUGCGGCAa--Ga---UGGuCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 59486 0.7 0.618127
Target:  5'- -aGGCGCCc-UCgaagagcCCGGCGGCCUCCg -3'
miRNA:   3'- gaCUGCGGcaAGau-----GGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 59301 0.67 0.793344
Target:  5'- gUGGCGCCcg-CgGCuCAGCGggcccgcGCCCCCg -3'
miRNA:   3'- gACUGCGGcaaGaUG-GUCGU-------CGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.