miRNA display CGI


Results 101 - 120 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 58707 0.77 0.261025
Target:  5'- --aGCGCCGggUCcGCCAGC-GCCCCCg -3'
miRNA:   3'- gacUGCGGCa-AGaUGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 57438 0.66 0.811877
Target:  5'- --cACGuCCG-UCg--CGGCGGCCCCCg -3'
miRNA:   3'- gacUGC-GGCaAGaugGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 55900 0.68 0.718658
Target:  5'- --uGCGCCGggCgACCgAGCGGCUCCg -3'
miRNA:   3'- gacUGCGGCaaGaUGG-UCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 53410 0.67 0.794242
Target:  5'- -cGACgGCCGUg--AgCAGguGCCgCCCg -3'
miRNA:   3'- gaCUG-CGGCAagaUgGUCguCGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 52355 0.73 0.434594
Target:  5'- -cGuCGUCGUcgUCcGCCGGCGcGCCCCCg -3'
miRNA:   3'- gaCuGCGGCA--AGaUGGUCGU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 52088 0.71 0.528188
Target:  5'- uCUGcaGCGCCG-UCgagagcagcgcGCCGcGCAGCCCCCc -3'
miRNA:   3'- -GAC--UGCGGCaAGa----------UGGU-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 52044 0.68 0.698855
Target:  5'- -cGGCGCCGUcgCgUGCguGUAGCCCa- -3'
miRNA:   3'- gaCUGCGGCAa-G-AUGguCGUCGGGgg -5'
29639 3' -57.8 NC_006151.1 + 51658 0.66 0.828872
Target:  5'- gCUGAUGCCGUUgU-CCcGCucgGGCUCCUc -3'
miRNA:   3'- -GACUGCGGCAAgAuGGuCG---UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 50878 0.66 0.83711
Target:  5'- -gGACcCCGUccCgggGCCGGCcgcGCCCCCc -3'
miRNA:   3'- gaCUGcGGCAa-Ga--UGGUCGu--CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 50840 0.66 0.828872
Target:  5'- -cGcCGCCGUcCccUCGGCGGCCgCCCu -3'
miRNA:   3'- gaCuGCGGCAaGauGGUCGUCGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 50340 0.66 0.845165
Target:  5'- -cGGCGCCug---GCC-GCGGCCuCCCg -3'
miRNA:   3'- gaCUGCGGcaagaUGGuCGUCGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 50006 0.66 0.811877
Target:  5'- uUGcGCGCCGcgCgcgcgGCCcGCGcggcGCCCCCg -3'
miRNA:   3'- gAC-UGCGGCaaGa----UGGuCGU----CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 49264 0.67 0.766734
Target:  5'- gUGcGCGCCGUcgu-CCAGCGGCUCUg -3'
miRNA:   3'- gAC-UGCGGCAagauGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 48817 0.68 0.708788
Target:  5'- -gGACGCC-UUCgccGCCGaguucgacGUGGCCCCCu -3'
miRNA:   3'- gaCUGCGGcAAGa--UGGU--------CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 48635 0.75 0.351337
Target:  5'- uCUaACGCCGccaccgccgCUGCagCAGCAGCCCCCg -3'
miRNA:   3'- -GAcUGCGGCaa-------GAUG--GUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 46807 0.69 0.638404
Target:  5'- -cGGCGcCCGUcgcccUCUGCCucu-GCCCCCg -3'
miRNA:   3'- gaCUGC-GGCA-----AGAUGGucguCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 41521 0.67 0.785205
Target:  5'- -gGGCGCCGcgg-AgCGGaAGCCCCCg -3'
miRNA:   3'- gaCUGCGGCaagaUgGUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 40218 0.69 0.688867
Target:  5'- -gGACGCCGgcaacccCUACCuGCuGCUCCg -3'
miRNA:   3'- gaCUGCGGCaa-----GAUGGuCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 39966 0.67 0.785205
Target:  5'- -gGGCGCCGUcgCcGCC-GCGGgCgCCCCg -3'
miRNA:   3'- gaCUGCGGCAa-GaUGGuCGUC-G-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 39664 0.67 0.776033
Target:  5'- gCUGcCGCCGcgCgccuaccGCCAGCGcguGCuCCCCa -3'
miRNA:   3'- -GACuGCGGCaaGa------UGGUCGU---CG-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.