miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 74867 0.66 0.803135
Target:  5'- -aGGCGCCGcgC-ACC-GCGGCCaCCg -3'
miRNA:   3'- gaCUGCGGCaaGaUGGuCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 136236 0.66 0.803135
Target:  5'- -aGACGCUGgugCUgGCCAcGC-GCCUCCa -3'
miRNA:   3'- gaCUGCGGCaa-GA-UGGU-CGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 63539 0.66 0.803135
Target:  5'- -aGACGCCGgcg-ACCAcGUAGCUCUg -3'
miRNA:   3'- gaCUGCGGCaagaUGGU-CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 95096 0.67 0.794242
Target:  5'- aUGACGCCGUag----AGCAGCUCCUc -3'
miRNA:   3'- gACUGCGGCAagauggUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 111382 0.67 0.794242
Target:  5'- ---uCGCCGUcgUCgccgccGCCGGCA-CCCCCg -3'
miRNA:   3'- gacuGCGGCA--AGa-----UGGUCGUcGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 104727 0.67 0.794242
Target:  5'- -cGGCGCCGUgacCUACCuGgAGCgCUUCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGuCgUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 102898 0.67 0.794242
Target:  5'- cCUG-CGCCGccucgUCgacucGCUGGCGGCCgCCg -3'
miRNA:   3'- -GACuGCGGCa----AGa----UGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 94275 0.66 0.803135
Target:  5'- uUGGCGUCG-UCgcCCAGCGGCaggUCCg -3'
miRNA:   3'- gACUGCGGCaAGauGGUCGUCGg--GGG- -5'
29639 3' -57.8 NC_006151.1 + 9066 0.66 0.811877
Target:  5'- -gGGCGCCG----GCCGGCcaucCCCCCa -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGuc--GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 50006 0.66 0.811877
Target:  5'- uUGcGCGCCGcgCgcgcgGCCcGCGcggcGCCCCCg -3'
miRNA:   3'- gAC-UGCGGCaaGa----UGGuCGU----CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 123856 0.66 0.823844
Target:  5'- -gGGCGCCGUcgcgcuagcgCUGCUGcugcuggcgcucgccGCGGCCCCg -3'
miRNA:   3'- gaCUGCGGCAa---------GAUGGU---------------CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 36811 0.66 0.820458
Target:  5'- -cGuCGCCGUcgagaccgUC-GCCcGCGGCCCCg -3'
miRNA:   3'- gaCuGCGGCA--------AGaUGGuCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 5730 0.66 0.820458
Target:  5'- gUGGCGCCGgggUCcgagGCCGcGCcGCCggCCCg -3'
miRNA:   3'- gACUGCGGCa--AGa---UGGU-CGuCGG--GGG- -5'
29639 3' -57.8 NC_006151.1 + 24519 0.66 0.820458
Target:  5'- -gGGCGCCGccacgUUGCagcgcGCGGCCCCg -3'
miRNA:   3'- gaCUGCGGCaa---GAUGgu---CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 91493 0.66 0.820458
Target:  5'- -cGcACGCUGgcgugC-ACCAGCAGCCCggCCu -3'
miRNA:   3'- gaC-UGCGGCaa---GaUGGUCGUCGGG--GG- -5'
29639 3' -57.8 NC_006151.1 + 86297 0.66 0.817901
Target:  5'- -cGGCGUCGUcaaCUGCCcGCAGCUgggggccgugcucgCCCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGuCGUCGG--------------GGG- -5'
29639 3' -57.8 NC_006151.1 + 112710 0.66 0.811877
Target:  5'- -cGGCGCUGUgcgCcaagGCCcuGGCcuGCCCCCc -3'
miRNA:   3'- gaCUGCGGCAa--Ga---UGG--UCGu-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 106885 0.66 0.811877
Target:  5'- gUGACGCUGUgcgACCuGCGcGaCCCCg -3'
miRNA:   3'- gACUGCGGCAagaUGGuCGU-CgGGGG- -5'
29639 3' -57.8 NC_006151.1 + 78779 0.66 0.811877
Target:  5'- cCUGAcCGCC-UUCggcgacucGCCcGCGGCCCuCCg -3'
miRNA:   3'- -GACU-GCGGcAAGa-------UGGuCGUCGGG-GG- -5'
29639 3' -57.8 NC_006151.1 + 57438 0.66 0.811877
Target:  5'- --cACGuCCG-UCg--CGGCGGCCCCCg -3'
miRNA:   3'- gacUGC-GGCaAGaugGUCGUCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.