Results 141 - 148 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 104727 | 0.67 | 0.794242 |
Target: 5'- -cGGCGCCGUgacCUACCuGgAGCgCUUCg -3' miRNA: 3'- gaCUGCGGCAa--GAUGGuCgUCG-GGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 102898 | 0.67 | 0.794242 |
Target: 5'- cCUG-CGCCGccucgUCgacucGCUGGCGGCCgCCg -3' miRNA: 3'- -GACuGCGGCa----AGa----UGGUCGUCGGgGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 53410 | 0.67 | 0.794242 |
Target: 5'- -cGACgGCCGUg--AgCAGguGCCgCCCg -3' miRNA: 3'- gaCUG-CGGCAagaUgGUCguCGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 59301 | 0.67 | 0.793344 |
Target: 5'- gUGGCGCCcg-CgGCuCAGCGggcccgcGCCCCCg -3' miRNA: 3'- gACUGCGGcaaGaUG-GUCGU-------CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 133646 | 0.67 | 0.788836 |
Target: 5'- -gGugGuCCGggugcgagaggcgCUGCCGGCGcggcggcgcGCCCCCg -3' miRNA: 3'- gaCugC-GGCaa-----------GAUGGUCGU---------CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 139640 | 0.67 | 0.785205 |
Target: 5'- -cGGCGCCGgcgcgggggUCgcgGCgGGCGcGCCgCCCg -3' miRNA: 3'- gaCUGCGGCa--------AGa--UGgUCGU-CGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 41521 | 0.67 | 0.785205 |
Target: 5'- -gGGCGCCGcgg-AgCGGaAGCCCCCg -3' miRNA: 3'- gaCUGCGGCaagaUgGUCgUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 74559 | 0.68 | 0.728455 |
Target: 5'- cCUGGgGCUGgUUgcCCAGCGgGUCCCCg -3' miRNA: 3'- -GACUgCGGCaAGauGGUCGU-CGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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