Results 41 - 60 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 4691 | 0.66 | 0.845165 |
Target: 5'- -gGACaugGCC--UC-GCCGGCGGCCCCg -3' miRNA: 3'- gaCUG---CGGcaAGaUGGUCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 83549 | 0.66 | 0.845165 |
Target: 5'- -aGACGaCCGUcaUCU-CgGGCGGgCCCUCg -3' miRNA: 3'- gaCUGC-GGCA--AGAuGgUCGUC-GGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 135927 | 0.66 | 0.845165 |
Target: 5'- --uGCGCgCGcUCUGCCgcgGGgAGCCCCUc -3' miRNA: 3'- gacUGCG-GCaAGAUGG---UCgUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 33196 | 0.66 | 0.845165 |
Target: 5'- -gGAUgGCCG----GCCGGC-GCCCCCg -3' miRNA: 3'- gaCUG-CGGCaagaUGGUCGuCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 50340 | 0.66 | 0.845165 |
Target: 5'- -cGGCGCCug---GCC-GCGGCCuCCCg -3' miRNA: 3'- gaCUGCGGcaagaUGGuCGUCGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 18717 | 0.66 | 0.834657 |
Target: 5'- gUGACGCCGUccacguagaucgcgUCgucGCCGccGCcggGGCCCCa -3' miRNA: 3'- gACUGCGGCA--------------AGa--UGGU--CG---UCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 122970 | 0.66 | 0.830534 |
Target: 5'- -gGACGCCGgcgacgggggcgUCggcgacgaagacggGcCCGGCGcGCCCCCg -3' miRNA: 3'- gaCUGCGGCa-----------AGa-------------U-GGUCGU-CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 5730 | 0.66 | 0.820458 |
Target: 5'- gUGGCGCCGgggUCcgagGCCGcGCcGCCggCCCg -3' miRNA: 3'- gACUGCGGCa--AGa---UGGU-CGuCGG--GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 36811 | 0.66 | 0.820458 |
Target: 5'- -cGuCGCCGUcgagaccgUC-GCCcGCGGCCCCg -3' miRNA: 3'- gaCuGCGGCA--------AGaUGGuCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 123856 | 0.66 | 0.823844 |
Target: 5'- -gGGCGCCGUcgcgcuagcgCUGCUGcugcuggcgcucgccGCGGCCCCg -3' miRNA: 3'- gaCUGCGGCAa---------GAUGGU---------------CGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 134390 | 0.66 | 0.823844 |
Target: 5'- -gGACGCCGgauacgacaucccCUGCCcGCGcgagcuggugcuGCCCCCc -3' miRNA: 3'- gaCUGCGGCaa-----------GAUGGuCGU------------CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 137012 | 0.66 | 0.826366 |
Target: 5'- -cGGCGCUGggcgcccugcucggcCUGCCGGacgcguGCCCCCc -3' miRNA: 3'- gaCUGCGGCaa-------------GAUGGUCgu----CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 90221 | 0.66 | 0.827203 |
Target: 5'- -gGACGCCGgccgagaucgcgUCgcgGCUGGcCAGCgCCCa -3' miRNA: 3'- gaCUGCGGCa-----------AGa--UGGUC-GUCGgGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 74655 | 0.66 | 0.828872 |
Target: 5'- -cGGCGCaGUcCU-CgGGCAGCuCCCCg -3' miRNA: 3'- gaCUGCGgCAaGAuGgUCGUCG-GGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 99344 | 0.66 | 0.828872 |
Target: 5'- --cGCGCCGUcggCUGCaCGGCGGUCgUCg -3' miRNA: 3'- gacUGCGGCAa--GAUG-GUCGUCGGgGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 105560 | 0.66 | 0.828872 |
Target: 5'- -cGACGCCcugCgcgcGCUGGCGGCCgCCu -3' miRNA: 3'- gaCUGCGGcaaGa---UGGUCGUCGGgGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 50840 | 0.66 | 0.828872 |
Target: 5'- -cGcCGCCGUcCccUCGGCGGCCgCCCu -3' miRNA: 3'- gaCuGCGGCAaGauGGUCGUCGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 51658 | 0.66 | 0.828872 |
Target: 5'- gCUGAUGCCGUUgU-CCcGCucgGGCUCCUc -3' miRNA: 3'- -GACUGCGGCAAgAuGGuCG---UCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 95911 | 0.66 | 0.828872 |
Target: 5'- aUGAUGCCGc---GCguGCAGUCgCCCg -3' miRNA: 3'- gACUGCGGCaagaUGguCGUCGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 21867 | 0.66 | 0.829704 |
Target: 5'- -aGGCGCCGguaCUggcccucguugaaccGCCccggagccaccaugAGCAGCCCCa -3' miRNA: 3'- gaCUGCGGCaa-GA---------------UGG--------------UCGUCGGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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