Results 121 - 140 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 21024 | 0.67 | 0.756371 |
Target: 5'- gCUGACGCCGgc--GCCccugaagAGgAcGCCCCCg -3' miRNA: 3'- -GACUGCGGCaagaUGG-------UCgU-CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 69469 | 0.67 | 0.747794 |
Target: 5'- -gGGCGCCGgcaccgUCgccGCCgccucgAGC-GCCCCCg -3' miRNA: 3'- gaCUGCGGCa-----AGa--UGG------UCGuCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 41521 | 0.67 | 0.785205 |
Target: 5'- -gGGCGCCGcgg-AgCGGaAGCCCCCg -3' miRNA: 3'- gaCUGCGGCaagaUgGUCgUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 139640 | 0.67 | 0.785205 |
Target: 5'- -cGGCGCCGgcgcgggggUCgcgGCgGGCGcGCCgCCCg -3' miRNA: 3'- gaCUGCGGCa--------AGa--UGgUCGU-CGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 133646 | 0.67 | 0.788836 |
Target: 5'- -gGugGuCCGggugcgagaggcgCUGCCGGCGcggcggcgcGCCCCCg -3' miRNA: 3'- gaCugC-GGCaa-----------GAUGGUCGU---------CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 50006 | 0.66 | 0.811877 |
Target: 5'- uUGcGCGCCGcgCgcgcgGCCcGCGcggcGCCCCCg -3' miRNA: 3'- gAC-UGCGGCaaGa----UGGuCGU----CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 9066 | 0.66 | 0.811877 |
Target: 5'- -gGGCGCCG----GCCGGCcaucCCCCCa -3' miRNA: 3'- gaCUGCGGCaagaUGGUCGuc--GGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 94275 | 0.66 | 0.803135 |
Target: 5'- uUGGCGUCG-UCgcCCAGCGGCaggUCCg -3' miRNA: 3'- gACUGCGGCaAGauGGUCGUCGg--GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 70636 | 0.66 | 0.803135 |
Target: 5'- -cGGCGCCGUg--GCCGcGCgcgaGGCgCCCg -3' miRNA: 3'- gaCUGCGGCAagaUGGU-CG----UCGgGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 12006 | 0.66 | 0.803135 |
Target: 5'- gUGGCGcCCGUcgUCUcucccGCCGGCGcaaCCCCg -3' miRNA: 3'- gACUGC-GGCA--AGA-----UGGUCGUcg-GGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 81219 | 0.66 | 0.803135 |
Target: 5'- -gGGCGCCGgcgCgugaacacgaaGCUGGC-GCCCCCg -3' miRNA: 3'- gaCUGCGGCaa-Ga----------UGGUCGuCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 74867 | 0.66 | 0.803135 |
Target: 5'- -aGGCGCCGcgC-ACC-GCGGCCaCCg -3' miRNA: 3'- gaCUGCGGCaaGaUGGuCGUCGGgGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 136236 | 0.66 | 0.803135 |
Target: 5'- -aGACGCUGgugCUgGCCAcGC-GCCUCCa -3' miRNA: 3'- gaCUGCGGCaa-GA-UGGU-CGuCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 63539 | 0.66 | 0.803135 |
Target: 5'- -aGACGCCGgcg-ACCAcGUAGCUCUg -3' miRNA: 3'- gaCUGCGGCaagaUGGU-CGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 95096 | 0.67 | 0.794242 |
Target: 5'- aUGACGCCGUag----AGCAGCUCCUc -3' miRNA: 3'- gACUGCGGCAagauggUCGUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 111382 | 0.67 | 0.794242 |
Target: 5'- ---uCGCCGUcgUCgccgccGCCGGCA-CCCCCg -3' miRNA: 3'- gacuGCGGCA--AGa-----UGGUCGUcGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 104727 | 0.67 | 0.794242 |
Target: 5'- -cGGCGCCGUgacCUACCuGgAGCgCUUCg -3' miRNA: 3'- gaCUGCGGCAa--GAUGGuCgUCG-GGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 102898 | 0.67 | 0.794242 |
Target: 5'- cCUG-CGCCGccucgUCgacucGCUGGCGGCCgCCg -3' miRNA: 3'- -GACuGCGGCa----AGa----UGGUCGUCGGgGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 53410 | 0.67 | 0.794242 |
Target: 5'- -cGACgGCCGUg--AgCAGguGCCgCCCg -3' miRNA: 3'- gaCUG-CGGCAagaUgGUCguCGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 59301 | 0.67 | 0.793344 |
Target: 5'- gUGGCGCCcg-CgGCuCAGCGggcccgcGCCCCCg -3' miRNA: 3'- gACUGCGGcaaGaUG-GUCGU-------CGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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