miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 5' -49.6 NC_006151.1 + 20129 0.67 0.993177
Target:  5'- gGGcUGGGggGCgGGcGCCGCGGGGGCg -3'
miRNA:   3'- aCC-ACUUgaUGaCCaUGGCGUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 106353 0.67 0.992115
Target:  5'- cGGUGGACacGCUGGa--CGCGGGcGCg -3'
miRNA:   3'- aCCACUUGa-UGACCaugGCGUUCuUG- -5'
29639 5' -49.6 NC_006151.1 + 85828 0.67 0.992115
Target:  5'- cGGUGcGC--CUGGUGgCGCuGGAGCu -3'
miRNA:   3'- aCCACuUGauGACCAUgGCGuUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 17115 0.67 0.992115
Target:  5'- cGG-GGGCUccgGCggcGGUGCUGCGGGAGg -3'
miRNA:   3'- aCCaCUUGA---UGa--CCAUGGCGUUCUUg -5'
29639 5' -49.6 NC_006151.1 + 102986 0.67 0.992115
Target:  5'- cUGGcGcAGCUGCUGGagGCgGgCGAGGACg -3'
miRNA:   3'- -ACCaC-UUGAUGACCa-UGgC-GUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 95693 0.67 0.990926
Target:  5'- aGGUGcc--GCUGGUAgCGCuggAAGAACa -3'
miRNA:   3'- aCCACuugaUGACCAUgGCG---UUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 22717 0.67 0.991418
Target:  5'- uUGGUGGuCUcggucucgaccgagaGCUGGagGCCGCcgaGGGAGCg -3'
miRNA:   3'- -ACCACUuGA---------------UGACCa-UGGCG---UUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 6085 0.67 0.990926
Target:  5'- cGGcgGGGCUGCUGcUGCUGCugggccgaagGAGGACg -3'
miRNA:   3'- aCCa-CUUGAUGACcAUGGCG----------UUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 91134 0.67 0.9896
Target:  5'- cGGcGAGCUuggccacCUGGgGgCGCGAGAGCg -3'
miRNA:   3'- aCCaCUUGAu------GACCaUgGCGUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 126389 0.67 0.988127
Target:  5'- cGGgcccGcGCUGCUGGccaGCCGCGucGGGGCg -3'
miRNA:   3'- aCCa---CuUGAUGACCa--UGGCGU--UCUUG- -5'
29639 5' -49.6 NC_006151.1 + 119181 0.67 0.987971
Target:  5'- aGGUGGACgACgcgGGcGCCGCcgacgcgcgcaagGAGGGCg -3'
miRNA:   3'- aCCACUUGaUGa--CCaUGGCG-------------UUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 120256 0.76 0.734485
Target:  5'- cGcGUGAGCUuCgaGGUGCUGCGGGAGCu -3'
miRNA:   3'- aC-CACUUGAuGa-CCAUGGCGUUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.