miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2964 3' -55.6 NC_001493.1 + 120263 0.66 0.935012
Target:  5'- cCCGggGGCcggcagCGGCGGGgGucACCGa -3'
miRNA:   3'- aGGCuuCUGa-----GCUGCCCgUgaUGGCc -5'
2964 3' -55.6 NC_001493.1 + 12326 0.66 0.935012
Target:  5'- -aCGAGGGCUCGAgCGGGCu---UCGa -3'
miRNA:   3'- agGCUUCUGAGCU-GCCCGugauGGCc -5'
2964 3' -55.6 NC_001493.1 + 127880 0.66 0.935012
Target:  5'- -aCGAGGGCUCGAgCGGGCu---UCGa -3'
miRNA:   3'- agGCUUCUGAGCU-GCCCGugauGGCc -5'
2964 3' -55.6 NC_001493.1 + 90262 0.66 0.934521
Target:  5'- cCCGuGGcaccccagauaguGCUCGGCGGaGCGCUauACCGc -3'
miRNA:   3'- aGGCuUC-------------UGAGCUGCC-CGUGA--UGGCc -5'
2964 3' -55.6 NC_001493.1 + 83530 0.66 0.929987
Target:  5'- aCCGGuagcGGGCUCGGCGGGgguCACgucaGGg -3'
miRNA:   3'- aGGCU----UCUGAGCUGCCC---GUGauggCC- -5'
2964 3' -55.6 NC_001493.1 + 33346 0.66 0.924726
Target:  5'- uUCCGGuuuuuCUCGGCGGGgACccugaugAUCGGg -3'
miRNA:   3'- -AGGCUucu--GAGCUGCCCgUGa------UGGCC- -5'
2964 3' -55.6 NC_001493.1 + 129198 0.66 0.924726
Target:  5'- cCCGAugcagAGGCgaUCGACGGcGCACgccuCCGu -3'
miRNA:   3'- aGGCU-----UCUG--AGCUGCC-CGUGau--GGCc -5'
2964 3' -55.6 NC_001493.1 + 13643 0.66 0.924726
Target:  5'- cCCGAugcagAGGCgaUCGACGGcGCACgccuCCGu -3'
miRNA:   3'- aGGCU-----UCUG--AGCUGCC-CGUGau--GGCc -5'
2964 3' -55.6 NC_001493.1 + 21589 0.66 0.924726
Target:  5'- aCCGAu--CggGAUGGGgAUUACCGGg -3'
miRNA:   3'- aGGCUucuGagCUGCCCgUGAUGGCC- -5'
2964 3' -55.6 NC_001493.1 + 126037 0.66 0.924726
Target:  5'- cCCGGAGAUuuUCGGgaucugaccaugUGGGCACagccCCGGu -3'
miRNA:   3'- aGGCUUCUG--AGCU------------GCCCGUGau--GGCC- -5'
2964 3' -55.6 NC_001493.1 + 10483 0.66 0.924726
Target:  5'- cCCGGAGAUuuUCGGgaucugaccaugUGGGCACagccCCGGu -3'
miRNA:   3'- aGGCUUCUG--AGCU------------GCCCGUGau--GGCC- -5'
2964 3' -55.6 NC_001493.1 + 120879 0.66 0.924726
Target:  5'- -gCGggGGCaccCG-UGGGCACcgugACCGGa -3'
miRNA:   3'- agGCuuCUGa--GCuGCCCGUGa---UGGCC- -5'
2964 3' -55.6 NC_001493.1 + 5325 0.66 0.924726
Target:  5'- -gCGggGGCaccCG-UGGGCACcgugACCGGa -3'
miRNA:   3'- agGCuuCUGa--GCuGCCCGUGa---UGGCC- -5'
2964 3' -55.6 NC_001493.1 + 110260 0.66 0.924726
Target:  5'- cUCCGA---UUCGAUGGGUGCcACCaGGg -3'
miRNA:   3'- -AGGCUucuGAGCUGCCCGUGaUGG-CC- -5'
2964 3' -55.6 NC_001493.1 + 14210 0.66 0.919229
Target:  5'- -aCGAGGACgUCGuCGGGCgACUgagcgACgCGGg -3'
miRNA:   3'- agGCUUCUG-AGCuGCCCG-UGA-----UG-GCC- -5'
2964 3' -55.6 NC_001493.1 + 63720 0.66 0.919229
Target:  5'- gUCGuuGGCUCccGCGGGCGucGCCGGu -3'
miRNA:   3'- aGGCuuCUGAGc-UGCCCGUgaUGGCC- -5'
2964 3' -55.6 NC_001493.1 + 63935 0.66 0.919229
Target:  5'- gUCGuuGGCUCccGCGGGCGucGCCGGu -3'
miRNA:   3'- aGGCuuCUGAGc-UGCCCGUgaUGGCC- -5'
2964 3' -55.6 NC_001493.1 + 112717 0.66 0.919229
Target:  5'- cCCGggGcuuCUCGAUGGGU-CUcCCGa -3'
miRNA:   3'- aGGCuuCu--GAGCUGCCCGuGAuGGCc -5'
2964 3' -55.6 NC_001493.1 + 129764 0.66 0.919229
Target:  5'- -aCGAGGACgUCGuCGGGCgACUgagcgACgCGGg -3'
miRNA:   3'- agGCUUCUG-AGCuGCCCG-UGA-----UG-GCC- -5'
2964 3' -55.6 NC_001493.1 + 43455 0.66 0.913497
Target:  5'- cUCCGggGGgUCGAUcuGCGCgGCCGa -3'
miRNA:   3'- -AGGCuuCUgAGCUGccCGUGaUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.