miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2964 5' -60.4 NC_001493.1 + 4317 0.66 0.711938
Target:  5'- gUCCGGguaaaccagcAGUGgggguucguuguUCCCaCCCCGGu-CCCg -3'
miRNA:   3'- aAGGCCa---------UCAC------------AGGG-GGGGCCuuGGG- -5'
2964 5' -60.4 NC_001493.1 + 119871 0.66 0.711938
Target:  5'- gUCCGGguaaaccagcAGUGgggguucguuguUCCCaCCCCGGu-CCCg -3'
miRNA:   3'- aAGGCCa---------UCAC------------AGGG-GGGGCCuuGGG- -5'
2964 5' -60.4 NC_001493.1 + 49780 0.66 0.702172
Target:  5'- --aCGGUGGUGUacaaCCCCCCugugcuggggGGAAgCUg -3'
miRNA:   3'- aagGCCAUCACAg---GGGGGG----------CCUUgGG- -5'
2964 5' -60.4 NC_001493.1 + 87627 0.66 0.69038
Target:  5'- -gCCGGUAGUG-CCCgucgaguCUUCGGAugacuccGCCCg -3'
miRNA:   3'- aaGGCCAUCACaGGG-------GGGGCCU-------UGGG- -5'
2964 5' -60.4 NC_001493.1 + 5477 0.66 0.672572
Target:  5'- cUCCucccUGGUcUCCUCCCCGGugAACCCg -3'
miRNA:   3'- aAGGcc--AUCAcAGGGGGGGCC--UUGGG- -5'
2964 5' -60.4 NC_001493.1 + 121031 0.66 0.672572
Target:  5'- cUCCucccUGGUcUCCUCCCCGGugAACCCg -3'
miRNA:   3'- aAGGcc--AUCAcAGGGGGGGCC--UUGGG- -5'
2964 5' -60.4 NC_001493.1 + 5480 0.66 0.672572
Target:  5'- cUCCc-UGGUcUCCUCCCCGGugAACCCg -3'
miRNA:   3'- aAGGccAUCAcAGGGGGGGCC--UUGGG- -5'
2964 5' -60.4 NC_001493.1 + 121034 0.66 0.672572
Target:  5'- cUCCc-UGGUcUCCUCCCCGGugAACCCg -3'
miRNA:   3'- aAGGccAUCAcAGGGGGGGCC--UUGGG- -5'
2964 5' -60.4 NC_001493.1 + 39041 0.67 0.656655
Target:  5'- cUUCCGGa--UGUCCCCCCgcaccuguaugagcuUGGugAGCCCg -3'
miRNA:   3'- -AAGGCCaucACAGGGGGG---------------GCC--UUGGG- -5'
2964 5' -60.4 NC_001493.1 + 13063 0.67 0.652667
Target:  5'- -cCCGGg---GUCCCguCCCCGGggUCa -3'
miRNA:   3'- aaGGCCaucaCAGGG--GGGGCCuuGGg -5'
2964 5' -60.4 NC_001493.1 + 128617 0.67 0.652667
Target:  5'- -cCCGGg---GUCCCguCCCCGGggUCa -3'
miRNA:   3'- aaGGCCaucaCAGGG--GGGGCCuuGGg -5'
2964 5' -60.4 NC_001493.1 + 25662 0.67 0.652667
Target:  5'- gUCCGGcacgGUUUCCCCCagugGGAACCUc -3'
miRNA:   3'- aAGGCCaucaCAGGGGGGG----CCUUGGG- -5'
2964 5' -60.4 NC_001493.1 + 29140 0.67 0.652667
Target:  5'- gUCCGGgccGUG-CCCCCgCGuucGGCCCg -3'
miRNA:   3'- aAGGCCau-CACaGGGGGgGCc--UUGGG- -5'
2964 5' -60.4 NC_001493.1 + 32458 0.67 0.652667
Target:  5'- gUCCaaacucGUGGa-UUCCCCCCGGGACUCa -3'
miRNA:   3'- aAGGc-----CAUCacAGGGGGGGCCUUGGG- -5'
2964 5' -60.4 NC_001493.1 + 18913 0.67 0.626707
Target:  5'- -aCCGGg---GUCUCUCCCGGGgguugguccucaggcACCCg -3'
miRNA:   3'- aaGGCCaucaCAGGGGGGGCCU---------------UGGG- -5'
2964 5' -60.4 NC_001493.1 + 128210 0.67 0.612731
Target:  5'- gUCCGGUucgagcgccgcgAGUaUCCCgagcgccccgaCCCCGGAcgcgACCCg -3'
miRNA:   3'- aAGGCCA------------UCAcAGGG-----------GGGGCCU----UGGG- -5'
2964 5' -60.4 NC_001493.1 + 12656 0.67 0.612731
Target:  5'- gUCCGGUucgagcgccgcgAGUaUCCCgagcgccccgaCCCCGGAcgcgACCCg -3'
miRNA:   3'- aAGGCCA------------UCAcAGGG-----------GGGGCCU----UGGG- -5'
2964 5' -60.4 NC_001493.1 + 45469 0.68 0.592817
Target:  5'- gUCCGGagucgaagGGUGU-CCCUCCGG-AUCCg -3'
miRNA:   3'- aAGGCCa-------UCACAgGGGGGGCCuUGGG- -5'
2964 5' -60.4 NC_001493.1 + 113473 0.68 0.592817
Target:  5'- -cCCGGcacgauccccGUGUCCUCCCUGuGGACCUu -3'
miRNA:   3'- aaGGCCau--------CACAGGGGGGGC-CUUGGG- -5'
2964 5' -60.4 NC_001493.1 + 23845 0.68 0.573012
Target:  5'- -gUCGGUcaUGaUCCCgCCCGGGAUCCc -3'
miRNA:   3'- aaGGCCAucAC-AGGGgGGGCCUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.