miRNA display CGI


Results 41 - 60 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 107357 0.66 0.761191
Target:  5'- cCCgGCCCGCGgccCCGAUccccgggcUGCCCcCCGa -3'
miRNA:   3'- -GG-CGGGCGUaa-GGCUGu-------ACGGGcGGC- -5'
29640 3' -60 NC_006151.1 + 82519 0.66 0.761191
Target:  5'- gUGCCCGCGgaugCgCGuguCGUugagcgcccccaGCCCGCCGa -3'
miRNA:   3'- gGCGGGCGUaa--G-GCu--GUA------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 18534 0.66 0.76211
Target:  5'- cCCGCCCGCGUcggcacccggaacggCCG-CGaGgCCGCCc -3'
miRNA:   3'- -GGCGGGCGUAa--------------GGCuGUaCgGGCGGc -5'
29640 3' -60 NC_006151.1 + 39681 0.66 0.76486
Target:  5'- aCCGCCagCGCGUgcuccccaCCguggacggcugcaagGACAUgGCCCGCCa -3'
miRNA:   3'- -GGCGG--GCGUAa-------GG---------------CUGUA-CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 93066 0.66 0.769422
Target:  5'- uCCGUCCGCGggcUCCGucuCAccucUGCcguccccCCGCCGu -3'
miRNA:   3'- -GGCGGGCGUa--AGGCu--GU----ACG-------GGCGGC- -5'
29640 3' -60 NC_006151.1 + 50809 0.66 0.769422
Target:  5'- cCCGCCagCGCAgcgUCCacgccucGGCccGCgCCGCCGu -3'
miRNA:   3'- -GGCGG--GCGUa--AGG-------CUGuaCG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 49578 0.66 0.770331
Target:  5'- -aGCCCGCGcucgCCGGC--GCCCcgGCCa -3'
miRNA:   3'- ggCGGGCGUaa--GGCUGuaCGGG--CGGc -5'
29640 3' -60 NC_006151.1 + 77173 0.66 0.770331
Target:  5'- gCGUCCGCcg-CCG-CGUccacGUCCGCCGc -3'
miRNA:   3'- gGCGGGCGuaaGGCuGUA----CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 91791 0.66 0.770331
Target:  5'- aCCGCCCgGCuuauaugCgCGGgAUGcCCCGCCc -3'
miRNA:   3'- -GGCGGG-CGuaa----G-GCUgUAC-GGGCGGc -5'
29640 3' -60 NC_006151.1 + 108233 0.67 0.714055
Target:  5'- aCCGCCCGCcccUCCaccaccgucugcucaGACuacgcuccccagGCCCGCCc -3'
miRNA:   3'- -GGCGGGCGua-AGG---------------CUGua----------CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 78161 0.67 0.714055
Target:  5'- cUCGgCCGCcgUggUCGAggcCGUGUCCGCCGu -3'
miRNA:   3'- -GGCgGGCGuaA--GGCU---GUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 57454 0.67 0.714055
Target:  5'- gCC-CCCGCG--UCGGCcagGUGCCgCGCCGc -3'
miRNA:   3'- -GGcGGGCGUaaGGCUG---UACGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 33577 0.67 0.714055
Target:  5'- aCCGCCCGC---CCGGCcaccaCCGUCGg -3'
miRNA:   3'- -GGCGGGCGuaaGGCUGuacg-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 109432 0.67 0.714055
Target:  5'- aCCGCCgGCcccaccaccUUCgCGGCcgGCCCcgacGCCGg -3'
miRNA:   3'- -GGCGGgCGu--------AAG-GCUGuaCGGG----CGGC- -5'
29640 3' -60 NC_006151.1 + 92664 0.67 0.719818
Target:  5'- cUCGCCCuGCug-CCGGCGgccggggacgcgcGCUCGCCGc -3'
miRNA:   3'- -GGCGGG-CGuaaGGCUGUa------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 89457 0.67 0.723646
Target:  5'- aCGCCUGCA--CCaGCAggGCCCGCg- -3'
miRNA:   3'- gGCGGGCGUaaGGcUGUa-CGGGCGgc -5'
29640 3' -60 NC_006151.1 + 5599 0.67 0.723646
Target:  5'- aCGaCCGCGguccccUCCGGCGgaggggGCgCCGCCGc -3'
miRNA:   3'- gGCgGGCGUa-----AGGCUGUa-----CG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 35111 0.67 0.723646
Target:  5'- gCGCCCGCGcgagggauuUUCgGACAaucucauugGCgCGCCGc -3'
miRNA:   3'- gGCGGGCGU---------AAGgCUGUa--------CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 58503 0.67 0.723646
Target:  5'- aUGCCCGCGcgCgGGCcgGCCuCGUCc -3'
miRNA:   3'- gGCGGGCGUaaGgCUGuaCGG-GCGGc -5'
29640 3' -60 NC_006151.1 + 57737 0.67 0.714055
Target:  5'- gCGCCCGCA---CGGCGcGCCgcaGCCGc -3'
miRNA:   3'- gGCGGGCGUaagGCUGUaCGGg--CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.