miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 35111 0.67 0.723646
Target:  5'- gCGCCCGCGcgagggauuUUCgGACAaucucauugGCgCGCCGc -3'
miRNA:   3'- gGCGGGCGU---------AAGgCUGUa--------CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 58503 0.67 0.723646
Target:  5'- aUGCCCGCGcgCgGGCcgGCCuCGUCc -3'
miRNA:   3'- gGCGGGCGUaaGgCUGuaCGG-GCGGc -5'
29640 3' -60 NC_006151.1 + 106189 0.67 0.723646
Target:  5'- cCCG-CCGCuggagCCGGCGgugcgGCUCGCCc -3'
miRNA:   3'- -GGCgGGCGuaa--GGCUGUa----CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 33577 0.67 0.714055
Target:  5'- aCCGCCCGC---CCGGCcaccaCCGUCGg -3'
miRNA:   3'- -GGCGGGCGuaaGGCUGuacg-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 57737 0.67 0.714055
Target:  5'- gCGCCCGCA---CGGCGcGCCgcaGCCGc -3'
miRNA:   3'- gGCGGGCGUaagGCUGUaCGGg--CGGC- -5'
29640 3' -60 NC_006151.1 + 139310 0.67 0.694686
Target:  5'- gCGCgUGCugcUCGAcCGUGCUCGCCGg -3'
miRNA:   3'- gGCGgGCGuaaGGCU-GUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 129790 0.67 0.694686
Target:  5'- cCCGCCgGCGUgggCCcGCAUgagGCCCGUg- -3'
miRNA:   3'- -GGCGGgCGUAa--GGcUGUA---CGGGCGgc -5'
29640 3' -60 NC_006151.1 + 31612 0.67 0.704399
Target:  5'- gCCGCCUGgg--CgGGgAUGCCgCGCCGg -3'
miRNA:   3'- -GGCGGGCguaaGgCUgUACGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 65798 0.67 0.704399
Target:  5'- gCCGCCCGgcg-CgGACGUGCCgCGgUGg -3'
miRNA:   3'- -GGCGGGCguaaGgCUGUACGG-GCgGC- -5'
29640 3' -60 NC_006151.1 + 68016 0.67 0.704399
Target:  5'- cUCGgCgGCGUccaggUCCaGGCG-GCCCGCCGg -3'
miRNA:   3'- -GGCgGgCGUA-----AGG-CUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 11300 0.67 0.704399
Target:  5'- cCCGCCCGCucUCCcg---GgCCGCCGc -3'
miRNA:   3'- -GGCGGGCGuaAGGcuguaCgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 50430 0.67 0.704399
Target:  5'- gCGCCCcuGCGcgCCGGCGgccuggGCaCCGCCc -3'
miRNA:   3'- gGCGGG--CGUaaGGCUGUa-----CG-GGCGGc -5'
29640 3' -60 NC_006151.1 + 69460 0.67 0.704399
Target:  5'- gCGCgCCGCGggcgCCGGCAccGUcgCCGCCGc -3'
miRNA:   3'- gGCG-GGCGUaa--GGCUGUa-CG--GGCGGC- -5'
29640 3' -60 NC_006151.1 + 106378 0.67 0.704399
Target:  5'- gCGCCCGCcg--CGGC--GCCCGCUGc -3'
miRNA:   3'- gGCGGGCGuaagGCUGuaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 95020 0.67 0.704399
Target:  5'- cCCGCgCGCGUagCGGCuGUGCUCgaaGCCGu -3'
miRNA:   3'- -GGCGgGCGUAagGCUG-UACGGG---CGGC- -5'
29640 3' -60 NC_006151.1 + 107607 0.68 0.665285
Target:  5'- cCCGCCgGCg--CCGcc--GCCCGCCa -3'
miRNA:   3'- -GGCGGgCGuaaGGCuguaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 129370 0.68 0.665285
Target:  5'- gCGCUCgGgGUUCCGGCAcGCCCaCCa -3'
miRNA:   3'- gGCGGG-CgUAAGGCUGUaCGGGcGGc -5'
29640 3' -60 NC_006151.1 + 36696 0.68 0.665285
Target:  5'- aCCGCgaGCcccugCuCGACGaGCCCGCCGc -3'
miRNA:   3'- -GGCGggCGuaa--G-GCUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 68775 0.68 0.665285
Target:  5'- gCGCgCGCGg--CGAgGUGCgCCGCCGc -3'
miRNA:   3'- gGCGgGCGUaagGCUgUACG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 107550 0.68 0.665285
Target:  5'- cCCGCCgGCg--CCGcc--GCCCGCCa -3'
miRNA:   3'- -GGCGGgCGuaaGGCuguaCGGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.