miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 73100 0.68 0.645547
Target:  5'- cUCGCCgUGCAccucgCCGGCGgcgcGCCCGCgCGg -3'
miRNA:   3'- -GGCGG-GCGUaa---GGCUGUa---CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 102001 0.68 0.635659
Target:  5'- uCCGCCCGCGcaCCcGCGaGCCCaugggcuucGCCGu -3'
miRNA:   3'- -GGCGGGCGUaaGGcUGUaCGGG---------CGGC- -5'
29640 3' -60 NC_006151.1 + 40136 0.68 0.635659
Target:  5'- gCGUCCGCGgcggcgacggCCGGCcccgcgGCCCGCuCGg -3'
miRNA:   3'- gGCGGGCGUaa--------GGCUGua----CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 779 0.68 0.635659
Target:  5'- gCGCCaCGCGgucgCCGucguCAUcGuCCCGCCGg -3'
miRNA:   3'- gGCGG-GCGUaa--GGCu---GUA-C-GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 36827 0.68 0.63467
Target:  5'- gUCGCCCGCGgcCCcgagaaggacgagGACGgacucgGCCuCGCCGg -3'
miRNA:   3'- -GGCGGGCGUaaGG-------------CUGUa-----CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 112415 0.68 0.625769
Target:  5'- gCCGCgCGCAgaUCGACc-GCCgCGCCGc -3'
miRNA:   3'- -GGCGgGCGUaaGGCUGuaCGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 104124 0.68 0.625769
Target:  5'- gCGCCUGCG---CGACGUGgCgGCCGa -3'
miRNA:   3'- gGCGGGCGUaagGCUGUACgGgCGGC- -5'
29640 3' -60 NC_006151.1 + 76196 0.68 0.655425
Target:  5'- gCGCagCCGCAUggCCGACGagaugUGCgUGCCGu -3'
miRNA:   3'- gGCG--GGCGUAa-GGCUGU-----ACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 11452 0.68 0.655425
Target:  5'- cCCGCCCGCGUgcccCCGGg--GCCaucgGCUGg -3'
miRNA:   3'- -GGCGGGCGUAa---GGCUguaCGGg---CGGC- -5'
29640 3' -60 NC_006151.1 + 68775 0.68 0.665285
Target:  5'- gCGCgCGCGg--CGAgGUGCgCCGCCGc -3'
miRNA:   3'- gGCGgGCGUaagGCUgUACG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 36696 0.68 0.665285
Target:  5'- aCCGCgaGCcccugCuCGACGaGCCCGCCGc -3'
miRNA:   3'- -GGCGggCGuaa--G-GCUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 129370 0.68 0.665285
Target:  5'- gCGCUCgGgGUUCCGGCAcGCCCaCCa -3'
miRNA:   3'- gGCGGG-CgUAAGGCUGUaCGGGcGGc -5'
29640 3' -60 NC_006151.1 + 107607 0.68 0.665285
Target:  5'- cCCGCCgGCg--CCGcc--GCCCGCCa -3'
miRNA:   3'- -GGCGGgCGuaaGGCuguaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 107550 0.68 0.665285
Target:  5'- cCCGCCgGCg--CCGcc--GCCCGCCa -3'
miRNA:   3'- -GGCGGgCGuaaGGCuguaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 64491 0.68 0.665285
Target:  5'- aCGCCCGCGggcgCgGGCGgcgggcGCgCGCCGc -3'
miRNA:   3'- gGCGGGCGUaa--GgCUGUa-----CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 493 0.68 0.665285
Target:  5'- cCCGCgCGCAacUUCCGccggACGUGa-CGCCGg -3'
miRNA:   3'- -GGCGgGCGU--AAGGC----UGUACggGCGGC- -5'
29640 3' -60 NC_006151.1 + 137497 0.68 0.665285
Target:  5'- gCCGCCCuCg--CCGACuuuggcGCCgCGCCGg -3'
miRNA:   3'- -GGCGGGcGuaaGGCUGua----CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 121455 0.68 0.655425
Target:  5'- gUGCCCGCGgagCUGGgGggcaagcGCCCGCCc -3'
miRNA:   3'- gGCGGGCGUaa-GGCUgUa------CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 59304 0.68 0.655425
Target:  5'- gCGCCCGCGgcUCaGCggGCCCGCg- -3'
miRNA:   3'- gGCGGGCGUaaGGcUGuaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 12803 0.68 0.655425
Target:  5'- gCGCCCGCucccUCCG-CGUccccucucCCCGCCGc -3'
miRNA:   3'- gGCGGGCGua--AGGCuGUAc-------GGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.