miRNA display CGI


Results 121 - 140 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 107550 0.68 0.665285
Target:  5'- cCCGCCgGCg--CCGcc--GCCCGCCa -3'
miRNA:   3'- -GGCGGgCGuaaGGCuguaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 107607 0.68 0.665285
Target:  5'- cCCGCCgGCg--CCGcc--GCCCGCCa -3'
miRNA:   3'- -GGCGGgCGuaaGGCuguaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 129370 0.68 0.665285
Target:  5'- gCGCUCgGgGUUCCGGCAcGCCCaCCa -3'
miRNA:   3'- gGCGGG-CgUAAGGCUGUaCGGGcGGc -5'
29640 3' -60 NC_006151.1 + 36696 0.68 0.665285
Target:  5'- aCCGCgaGCcccugCuCGACGaGCCCGCCGc -3'
miRNA:   3'- -GGCGggCGuaa--G-GCUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 68775 0.68 0.665285
Target:  5'- gCGCgCGCGg--CGAgGUGCgCCGCCGc -3'
miRNA:   3'- gGCGgGCGUaagGCUgUACG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 114039 0.68 0.669223
Target:  5'- gCUGCCCuucgaccucggccagGCGguggCCGACAacUGCCUGUCGc -3'
miRNA:   3'- -GGCGGG---------------CGUaa--GGCUGU--ACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 121455 0.68 0.655425
Target:  5'- gUGCCCGCGgagCUGGgGggcaagcGCCCGCCc -3'
miRNA:   3'- gGCGGGCGUaa-GGCUgUa------CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 59304 0.68 0.655425
Target:  5'- gCGCCCGCGgcUCaGCggGCCCGCg- -3'
miRNA:   3'- gGCGGGCGUaaGGcUGuaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 73100 0.68 0.645547
Target:  5'- cUCGCCgUGCAccucgCCGGCGgcgcGCCCGCgCGg -3'
miRNA:   3'- -GGCGG-GCGUaa---GGCUGUa---CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 39867 0.68 0.645547
Target:  5'- -aGCuCCGCGgccCCGAgG-GCCUGCCGg -3'
miRNA:   3'- ggCG-GGCGUaa-GGCUgUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 66231 0.68 0.645547
Target:  5'- gCGCCCGCGcagaagCuCGACgGUGCgCGCCu -3'
miRNA:   3'- gGCGGGCGUaa----G-GCUG-UACGgGCGGc -5'
29640 3' -60 NC_006151.1 + 73961 0.68 0.645547
Target:  5'- aUGuCCCGCGUggccaCCGuggcCAUGCCCGCg- -3'
miRNA:   3'- gGC-GGGCGUAa----GGCu---GUACGGGCGgc -5'
29640 3' -60 NC_006151.1 + 34572 0.68 0.655425
Target:  5'- uCCGCUCGUcucUCCGACcgGCUggggCGCCc -3'
miRNA:   3'- -GGCGGGCGua-AGGCUGuaCGG----GCGGc -5'
29640 3' -60 NC_006151.1 + 38175 0.68 0.655425
Target:  5'- gUCGCCCGCA--CCGug--GCgCCGCUGg -3'
miRNA:   3'- -GGCGGGCGUaaGGCuguaCG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 76196 0.68 0.655425
Target:  5'- gCGCagCCGCAUggCCGACGagaugUGCgUGCCGu -3'
miRNA:   3'- gGCG--GGCGUAa-GGCUGU-----ACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 11452 0.68 0.655425
Target:  5'- cCCGCCCGCGUgcccCCGGg--GCCaucgGCUGg -3'
miRNA:   3'- -GGCGGGCGUAa---GGCUguaCGGg---CGGC- -5'
29640 3' -60 NC_006151.1 + 12803 0.68 0.655425
Target:  5'- gCGCCCGCucccUCCG-CGUccccucucCCCGCCGc -3'
miRNA:   3'- gGCGGGCGua--AGGCuGUAc-------GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 41542 0.69 0.606995
Target:  5'- cCCGCCCGCGgacccccggUgCGACGgaaggggcaggcucgGCgCGCCGa -3'
miRNA:   3'- -GGCGGGCGUa--------AgGCUGUa--------------CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 110204 0.69 0.606995
Target:  5'- gCCGCCUGCGggagacgCgGACGacccucaagggcagcGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCGUaa-----GgCUGUa--------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 101761 0.69 0.606008
Target:  5'- gCCGCCgCGCcg-CCGACGcgggGCCCcgggGCCa -3'
miRNA:   3'- -GGCGG-GCGuaaGGCUGUa---CGGG----CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.