miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 125227 0.7 0.509261
Target:  5'- gCCGCCCGuCGggcCCGGCGcucccccgGCCCGgCGg -3'
miRNA:   3'- -GGCGGGC-GUaa-GGCUGUa-------CGGGCgGC- -5'
29640 3' -60 NC_006151.1 + 67960 0.7 0.515853
Target:  5'- gCGCCgggggccaggaccaCGCAgUCgCGGCG-GCCCGCCGg -3'
miRNA:   3'- gGCGG--------------GCGUaAG-GCUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 16889 0.7 0.518689
Target:  5'- gCGCUCGCG-UCCGuugcCGcGCCCGCCc -3'
miRNA:   3'- gGCGGGCGUaAGGCu---GUaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 9048 0.7 0.518689
Target:  5'- gCGcCCCGCGUgcUCCGGgGgcGCCgGCCGg -3'
miRNA:   3'- gGC-GGGCGUA--AGGCUgUa-CGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 38326 0.7 0.518689
Target:  5'- -aGCCCGCGc-CCGGCcUGCCC-CCGc -3'
miRNA:   3'- ggCGGGCGUaaGGCUGuACGGGcGGC- -5'
29640 3' -60 NC_006151.1 + 60680 0.7 0.499906
Target:  5'- gCCG-CCGCcgUCCucccGCGcGCCCGCCGc -3'
miRNA:   3'- -GGCgGGCGuaAGGc---UGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 35854 0.7 0.509261
Target:  5'- gCCGCCCGCucUCCGcGCucggcGCCCgGCCu -3'
miRNA:   3'- -GGCGGGCGuaAGGC-UGua---CGGG-CGGc -5'
29640 3' -60 NC_006151.1 + 87307 0.7 0.518689
Target:  5'- cUCGCCCGUggcgcacgccGUgCCGGCGcucccggGCCUGCCGg -3'
miRNA:   3'- -GGCGGGCG----------UAaGGCUGUa------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 78519 0.7 0.547363
Target:  5'- cCCGCgaUCGCGgacCCGGCGgggGCCuCGCCGc -3'
miRNA:   3'- -GGCG--GGCGUaa-GGCUGUa--CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 30916 0.7 0.547363
Target:  5'- gCGCCCGCGggcggcCCGcGCGgaucGCCCGCgCGg -3'
miRNA:   3'- gGCGGGCGUaa----GGC-UGUa---CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 107702 0.7 0.547363
Target:  5'- -aGCCCGCcg-CCGGCAccaaGgCCGCCGc -3'
miRNA:   3'- ggCGGGCGuaaGGCUGUa---CgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 51991 0.7 0.547363
Target:  5'- -aGCuCCGCGgugCCGGCGUGCagcuugCGCCGc -3'
miRNA:   3'- ggCG-GGCGUaa-GGCUGUACGg-----GCGGC- -5'
29640 3' -60 NC_006151.1 + 37144 0.7 0.544472
Target:  5'- cUCGCCCGCgccgggccgccaccGUcUCCGcCGgcGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCG--------------UA-AGGCuGUa-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 91271 0.7 0.541585
Target:  5'- aCGCCCGCG-UCCGcaaaguacgcgcgccGCGUcagcaGCCgCGCCGg -3'
miRNA:   3'- gGCGGGCGUaAGGC---------------UGUA-----CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 129520 0.7 0.537744
Target:  5'- gCCGCuuGCcg-CCGACGgggggGCCCgggGCCGc -3'
miRNA:   3'- -GGCGggCGuaaGGCUGUa----CGGG---CGGC- -5'
29640 3' -60 NC_006151.1 + 46843 0.7 0.537744
Target:  5'- gCCGCCCcccgggGCGggccUCCGGCGUcuaGCUCGUCGg -3'
miRNA:   3'- -GGCGGG------CGUa---AGGCUGUA---CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 123018 0.7 0.528185
Target:  5'- cCCGCCgGCGgacgCCGugGcgugggcggaccUGCCgGCCGc -3'
miRNA:   3'- -GGCGGgCGUaa--GGCugU------------ACGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 63700 0.7 0.528185
Target:  5'- gCGUgCGCGUUCgcggCGACGUggcGCCCGUCGa -3'
miRNA:   3'- gGCGgGCGUAAG----GCUGUA---CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 92427 0.7 0.528185
Target:  5'- gCGCCCGUGUUCCcGCuggugcUGCgCUGCCGc -3'
miRNA:   3'- gGCGGGCGUAAGGcUGu-----ACG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 75778 0.7 0.518689
Target:  5'- aCGUCCGCGU----GCGUGUCCGCCa -3'
miRNA:   3'- gGCGGGCGUAaggcUGUACGGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.