Results 81 - 100 of 244 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29640 | 3' | -60 | NC_006151.1 | + | 60680 | 0.7 | 0.499906 |
Target: 5'- gCCG-CCGCcgUCCucccGCGcGCCCGCCGc -3' miRNA: 3'- -GGCgGGCGuaAGGc---UGUaCGGGCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 130652 | 0.7 | 0.509261 |
Target: 5'- gCCGCCUGCGgcgugaaCGucaGUGCCCGCgGg -3' miRNA: 3'- -GGCGGGCGUaag----GCug-UACGGGCGgC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 35227 | 0.69 | 0.596152 |
Target: 5'- -gGCCCGgGcgagCCGAgAUGgCCGCCGc -3' miRNA: 3'- ggCGGGCgUaa--GGCUgUACgGGCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 111384 | 0.69 | 0.586321 |
Target: 5'- gCCGUcgucgCCGCcg-CCGGCAccCCCGCCGg -3' miRNA: 3'- -GGCG-----GGCGuaaGGCUGUacGGGCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 5544 | 0.69 | 0.586321 |
Target: 5'- gCCGCCuCGCGg--CGGCggGCUCGUCGa -3' miRNA: 3'- -GGCGG-GCGUaagGCUGuaCGGGCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 81388 | 0.69 | 0.59025 |
Target: 5'- gCCGCgCCGCGgcgCCcagguuggccaggguGGCGUcCCCGCCGa -3' miRNA: 3'- -GGCG-GGCGUaa-GG---------------CUGUAcGGGCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 110204 | 0.69 | 0.606995 |
Target: 5'- gCCGCCUGCGggagacgCgGACGacccucaagggcagcGCCCGCCGc -3' miRNA: 3'- -GGCGGGCGUaa-----GgCUGUa--------------CGGGCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 87179 | 0.69 | 0.606008 |
Target: 5'- gCGCCCGCGgcgCCGccGCAgcUGCugCCGCCc -3' miRNA: 3'- gGCGGGCGUaa-GGC--UGU--ACG--GGCGGc -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 84530 | 0.69 | 0.606008 |
Target: 5'- gCGCCCcCGUUCCccgugGGCuucuggGCCCGCCc -3' miRNA: 3'- gGCGGGcGUAAGG-----CUGua----CGGGCGGc -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 119388 | 0.69 | 0.596152 |
Target: 5'- uCUGCCCGCAgcugCUGGCGcGCgUGCUGu -3' miRNA: 3'- -GGCGGGCGUaa--GGCUGUaCGgGCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 84916 | 0.69 | 0.609956 |
Target: 5'- gCCGCgCGCGgcgccgccUCCGGCGUGCUcuucggcacgugguaCGCCa -3' miRNA: 3'- -GGCGgGCGUa-------AGGCUGUACGG---------------GCGGc -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 41542 | 0.69 | 0.606995 |
Target: 5'- cCCGCCCGCGgacccccggUgCGACGgaaggggcaggcucgGCgCGCCGa -3' miRNA: 3'- -GGCGGGCGUa--------AgGCUGUa--------------CGgGCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 62298 | 0.69 | 0.566756 |
Target: 5'- -gGCCagCGCGgccUUCGGCGUGUCCGCCc -3' miRNA: 3'- ggCGG--GCGUa--AGGCUGUACGGGCGGc -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 109775 | 0.69 | 0.557035 |
Target: 5'- gCGCCCGCAccacccCCGAgcu-CCCGCCGg -3' miRNA: 3'- gGCGGGCGUaa----GGCUguacGGGCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 31208 | 0.69 | 0.566756 |
Target: 5'- -gGCCCGCGUccaggCCGGgcccCcgGCCgGCCGg -3' miRNA: 3'- ggCGGGCGUAa----GGCU----GuaCGGgCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 132831 | 0.69 | 0.566756 |
Target: 5'- gCCGCCCGCGggacggCCaccacgggcGGCcgGCCCgggGCCGc -3' miRNA: 3'- -GGCGGGCGUaa----GG---------CUGuaCGGG---CGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 72045 | 0.69 | 0.566756 |
Target: 5'- cCCGCCgCGCAgcgUCuCGGCGgcGCgCGCCa -3' miRNA: 3'- -GGCGG-GCGUa--AG-GCUGUa-CGgGCGGc -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 77276 | 0.69 | 0.572609 |
Target: 5'- gCCGCCuCGCucacccauuugCCGcGCcgcguGUGCCCGCCGc -3' miRNA: 3'- -GGCGG-GCGuaa--------GGC-UG-----UACGGGCGGC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 100574 | 0.69 | 0.566756 |
Target: 5'- gCCGCCUGCAggCCGccaccguccuGCG-GCCCGUgGa -3' miRNA: 3'- -GGCGGGCGUaaGGC----------UGUaCGGGCGgC- -5' |
|||||||
29640 | 3' | -60 | NC_006151.1 | + | 101761 | 0.69 | 0.606008 |
Target: 5'- gCCGCCgCGCcg-CCGACGcgggGCCCcgggGCCa -3' miRNA: 3'- -GGCGG-GCGuaaGGCUGUa---CGGG----CGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home