miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 84530 0.69 0.606008
Target:  5'- gCGCCCcCGUUCCccgugGGCuucuggGCCCGCCc -3'
miRNA:   3'- gGCGGGcGUAAGG-----CUGua----CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 119388 0.69 0.596152
Target:  5'- uCUGCCCGCAgcugCUGGCGcGCgUGCUGu -3'
miRNA:   3'- -GGCGGGCGUaa--GGCUGUaCGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 111384 0.69 0.586321
Target:  5'- gCCGUcgucgCCGCcg-CCGGCAccCCCGCCGg -3'
miRNA:   3'- -GGCG-----GGCGuaaGGCUGUacGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 109775 0.69 0.557035
Target:  5'- gCGCCCGCAccacccCCGAgcu-CCCGCCGg -3'
miRNA:   3'- gGCGGGCGUaa----GGCUguacGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 100574 0.69 0.566756
Target:  5'- gCCGCCUGCAggCCGccaccguccuGCG-GCCCGUgGa -3'
miRNA:   3'- -GGCGGGCGUaaGGC----------UGUaCGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 72045 0.69 0.566756
Target:  5'- cCCGCCgCGCAgcgUCuCGGCGgcGCgCGCCa -3'
miRNA:   3'- -GGCGG-GCGUa--AG-GCUGUa-CGgGCGGc -5'
29640 3' -60 NC_006151.1 + 45937 0.69 0.586321
Target:  5'- aCCGCCUGCccgCUGuGCaAUGCCCGCg- -3'
miRNA:   3'- -GGCGGGCGuaaGGC-UG-UACGGGCGgc -5'
29640 3' -60 NC_006151.1 + 102001 0.68 0.635659
Target:  5'- uCCGCCCGCGcaCCcGCGaGCCCaugggcuucGCCGu -3'
miRNA:   3'- -GGCGGGCGUaaGGcUGUaCGGG---------CGGC- -5'
29640 3' -60 NC_006151.1 + 40136 0.68 0.635659
Target:  5'- gCGUCCGCGgcggcgacggCCGGCcccgcgGCCCGCuCGg -3'
miRNA:   3'- gGCGGGCGUaa--------GGCUGua----CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 779 0.68 0.635659
Target:  5'- gCGCCaCGCGgucgCCGucguCAUcGuCCCGCCGg -3'
miRNA:   3'- gGCGG-GCGUaa--GGCu---GUA-C-GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 36827 0.68 0.63467
Target:  5'- gUCGCCCGCGgcCCcgagaaggacgagGACGgacucgGCCuCGCCGg -3'
miRNA:   3'- -GGCGGGCGUaaGG-------------CUGUa-----CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 112415 0.68 0.625769
Target:  5'- gCCGCgCGCAgaUCGACc-GCCgCGCCGc -3'
miRNA:   3'- -GGCGgGCGUaaGGCUGuaCGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 73100 0.68 0.645547
Target:  5'- cUCGCCgUGCAccucgCCGGCGgcgcGCCCGCgCGg -3'
miRNA:   3'- -GGCGG-GCGUaa---GGCUGUa---CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 39867 0.68 0.645547
Target:  5'- -aGCuCCGCGgccCCGAgG-GCCUGCCGg -3'
miRNA:   3'- ggCG-GGCGUaa-GGCUgUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 66231 0.68 0.645547
Target:  5'- gCGCCCGCGcagaagCuCGACgGUGCgCGCCu -3'
miRNA:   3'- gGCGGGCGUaa----G-GCUG-UACGgGCGGc -5'
29640 3' -60 NC_006151.1 + 73961 0.68 0.645547
Target:  5'- aUGuCCCGCGUggccaCCGuggcCAUGCCCGCg- -3'
miRNA:   3'- gGC-GGGCGUAa----GGCu---GUACGGGCGgc -5'
29640 3' -60 NC_006151.1 + 34572 0.68 0.655425
Target:  5'- uCCGCUCGUcucUCCGACcgGCUggggCGCCc -3'
miRNA:   3'- -GGCGGGCGua-AGGCUGuaCGG----GCGGc -5'
29640 3' -60 NC_006151.1 + 38175 0.68 0.655425
Target:  5'- gUCGCCCGCA--CCGug--GCgCCGCUGg -3'
miRNA:   3'- -GGCGGGCGUaaGGCuguaCG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 76196 0.68 0.655425
Target:  5'- gCGCagCCGCAUggCCGACGagaugUGCgUGCCGu -3'
miRNA:   3'- gGCG--GGCGUAa-GGCUGU-----ACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 11452 0.68 0.655425
Target:  5'- cCCGCCCGCGUgcccCCGGg--GCCaucgGCUGg -3'
miRNA:   3'- -GGCGGGCGUAa---GGCUguaCGGg---CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.