miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 78519 0.7 0.547363
Target:  5'- cCCGCgaUCGCGgacCCGGCGgggGCCuCGCCGc -3'
miRNA:   3'- -GGCG--GGCGUaa-GGCUGUa--CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 30916 0.7 0.547363
Target:  5'- gCGCCCGCGggcggcCCGcGCGgaucGCCCGCgCGg -3'
miRNA:   3'- gGCGGGCGUaa----GGC-UGUa---CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 109775 0.69 0.557035
Target:  5'- gCGCCCGCAccacccCCGAgcu-CCCGCCGg -3'
miRNA:   3'- gGCGGGCGUaa----GGCUguacGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 62298 0.69 0.566756
Target:  5'- -gGCCagCGCGgccUUCGGCGUGUCCGCCc -3'
miRNA:   3'- ggCGG--GCGUa--AGGCUGUACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 72045 0.69 0.566756
Target:  5'- cCCGCCgCGCAgcgUCuCGGCGgcGCgCGCCa -3'
miRNA:   3'- -GGCGG-GCGUa--AG-GCUGUa-CGgGCGGc -5'
29640 3' -60 NC_006151.1 + 132831 0.69 0.566756
Target:  5'- gCCGCCCGCGggacggCCaccacgggcGGCcgGCCCgggGCCGc -3'
miRNA:   3'- -GGCGGGCGUaa----GG---------CUGuaCGGG---CGGC- -5'
29640 3' -60 NC_006151.1 + 31208 0.69 0.566756
Target:  5'- -gGCCCGCGUccaggCCGGgcccCcgGCCgGCCGg -3'
miRNA:   3'- ggCGGGCGUAa----GGCU----GuaCGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 100574 0.69 0.566756
Target:  5'- gCCGCCUGCAggCCGccaccguccuGCG-GCCCGUgGa -3'
miRNA:   3'- -GGCGGGCGUaaGGC----------UGUaCGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 77276 0.69 0.572609
Target:  5'- gCCGCCuCGCucacccauuugCCGcGCcgcguGUGCCCGCCGc -3'
miRNA:   3'- -GGCGG-GCGuaa--------GGC-UG-----UACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 35771 0.69 0.57652
Target:  5'- aCGCCCGacccaCCGAggcucUcgGCCCGCCa -3'
miRNA:   3'- gGCGGGCguaa-GGCU-----GuaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 107258 0.69 0.580436
Target:  5'- aCGCCCGCGUggacCCGGCcaccucggaggagcuGUacgGCCgGCCGa -3'
miRNA:   3'- gGCGGGCGUAa---GGCUG---------------UA---CGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 109129 0.69 0.580436
Target:  5'- gCGCCCGCcggCCGggcaccuccgucuccACAU-CCCGCCGc -3'
miRNA:   3'- gGCGGGCGuaaGGC---------------UGUAcGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 111384 0.69 0.586321
Target:  5'- gCCGUcgucgCCGCcg-CCGGCAccCCCGCCGg -3'
miRNA:   3'- -GGCG-----GGCGuaaGGCUGUacGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 72224 0.69 0.586321
Target:  5'- -gGCCCGUGUUCUGcaGCAccagcgacUGCCCGCgGc -3'
miRNA:   3'- ggCGGGCGUAAGGC--UGU--------ACGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 45937 0.69 0.586321
Target:  5'- aCCGCCUGCccgCUGuGCaAUGCCCGCg- -3'
miRNA:   3'- -GGCGGGCGuaaGGC-UG-UACGGGCGgc -5'
29640 3' -60 NC_006151.1 + 11660 0.69 0.586321
Target:  5'- aCCGCCCGCGUUUgcuaCGAUcccugcGCCCGaCGg -3'
miRNA:   3'- -GGCGGGCGUAAG----GCUGua----CGGGCgGC- -5'
29640 3' -60 NC_006151.1 + 5544 0.69 0.586321
Target:  5'- gCCGCCuCGCGg--CGGCggGCUCGUCGa -3'
miRNA:   3'- -GGCGG-GCGUaagGCUGuaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 81388 0.69 0.59025
Target:  5'- gCCGCgCCGCGgcgCCcagguuggccaggguGGCGUcCCCGCCGa -3'
miRNA:   3'- -GGCG-GGCGUaa-GG---------------CUGUAcGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 119388 0.69 0.596152
Target:  5'- uCUGCCCGCAgcugCUGGCGcGCgUGCUGu -3'
miRNA:   3'- -GGCGGGCGUaa--GGCUGUaCGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 35227 0.69 0.596152
Target:  5'- -gGCCCGgGcgagCCGAgAUGgCCGCCGc -3'
miRNA:   3'- ggCGGGCgUaa--GGCUgUACgGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.