miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 87179 0.69 0.606008
Target:  5'- gCGCCCGCGgcgCCGccGCAgcUGCugCCGCCc -3'
miRNA:   3'- gGCGGGCGUaa-GGC--UGU--ACG--GGCGGc -5'
29640 3' -60 NC_006151.1 + 38573 0.69 0.606008
Target:  5'- gCGCCgCGCGc-CCGGg--GCCCGCCGc -3'
miRNA:   3'- gGCGG-GCGUaaGGCUguaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 84530 0.69 0.606008
Target:  5'- gCGCCCcCGUUCCccgugGGCuucuggGCCCGCCc -3'
miRNA:   3'- gGCGGGcGUAAGG-----CUGua----CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 101761 0.69 0.606008
Target:  5'- gCCGCCgCGCcg-CCGACGcgggGCCCcgggGCCa -3'
miRNA:   3'- -GGCGG-GCGuaaGGCUGUa---CGGG----CGGc -5'
29640 3' -60 NC_006151.1 + 110204 0.69 0.606995
Target:  5'- gCCGCCUGCGggagacgCgGACGacccucaagggcagcGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCGUaa-----GgCUGUa--------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 41542 0.69 0.606995
Target:  5'- cCCGCCCGCGgacccccggUgCGACGgaaggggcaggcucgGCgCGCCGa -3'
miRNA:   3'- -GGCGGGCGUa--------AgGCUGUa--------------CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 84916 0.69 0.609956
Target:  5'- gCCGCgCGCGgcgccgccUCCGGCGUGCUcuucggcacgugguaCGCCa -3'
miRNA:   3'- -GGCGgGCGUa-------AGGCUGUACGG---------------GCGGc -5'
29640 3' -60 NC_006151.1 + 37975 0.68 0.615883
Target:  5'- aCGCCUGCGUcCUGGCcUGCCgCGgCGu -3'
miRNA:   3'- gGCGGGCGUAaGGCUGuACGG-GCgGC- -5'
29640 3' -60 NC_006151.1 + 64290 0.68 0.615883
Target:  5'- -aGCgCCGCGUugUCgGGCGUGCCgcagcgCGCCGu -3'
miRNA:   3'- ggCG-GGCGUA--AGgCUGUACGG------GCGGC- -5'
29640 3' -60 NC_006151.1 + 61991 0.68 0.615883
Target:  5'- aCGCCUGCAagggCacggguGACGUGCgCGCCGc -3'
miRNA:   3'- gGCGGGCGUaa--Gg-----CUGUACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 19014 0.68 0.615883
Target:  5'- gCCGCgCGCGcgCCGGCGaggugaagcUGCaCGCCGg -3'
miRNA:   3'- -GGCGgGCGUaaGGCUGU---------ACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 136810 0.68 0.615883
Target:  5'- gCGCUCGCgg-CCGACGcGCCgCGCgGg -3'
miRNA:   3'- gGCGGGCGuaaGGCUGUaCGG-GCGgC- -5'
29640 3' -60 NC_006151.1 + 108367 0.68 0.615883
Target:  5'- aCCGCaUCGUAgagCCGAaggccgGUGCaCCGCCGg -3'
miRNA:   3'- -GGCG-GGCGUaa-GGCUg-----UACG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 120738 0.68 0.619836
Target:  5'- gCGCCCGCGggacCCGGCcgcgucauggccuggGUgcggcGCCCGCUGg -3'
miRNA:   3'- gGCGGGCGUaa--GGCUG---------------UA-----CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 134936 0.68 0.621813
Target:  5'- cCCGCCCGCccucUCCGGCuacaucuugcagGCCUcgGCCa -3'
miRNA:   3'- -GGCGGGCGua--AGGCUGua----------CGGG--CGGc -5'
29640 3' -60 NC_006151.1 + 120344 0.68 0.625769
Target:  5'- gCGCCCGCGUggCCGg---GCUCGCgGg -3'
miRNA:   3'- gGCGGGCGUAa-GGCuguaCGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 51473 0.68 0.625769
Target:  5'- uCUGCCCaCAgcCCGACugcGCCCaGCCGc -3'
miRNA:   3'- -GGCGGGcGUaaGGCUGua-CGGG-CGGC- -5'
29640 3' -60 NC_006151.1 + 70785 0.68 0.625769
Target:  5'- gCGCCUccgGCA--CCGGCGUGgCCGUCGu -3'
miRNA:   3'- gGCGGG---CGUaaGGCUGUACgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 73204 0.68 0.625769
Target:  5'- gCUGCCCGCGggCCag---GCCCGCgGg -3'
miRNA:   3'- -GGCGGGCGUaaGGcuguaCGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 112415 0.68 0.625769
Target:  5'- gCCGCgCGCAgaUCGACc-GCCgCGCCGc -3'
miRNA:   3'- -GGCGgGCGUaaGGCUGuaCGG-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.