miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 8883 0.67 0.684924
Target:  5'- uCCGCCCGacuUUCCGACucuccUCCGUCu -3'
miRNA:   3'- -GGCGGGCgu-AAGGCUGuac--GGGCGGc -5'
29640 3' -60 NC_006151.1 + 13426 0.67 0.684924
Target:  5'- -gGCCCGCGUccCCGGg--GCCCGCa- -3'
miRNA:   3'- ggCGGGCGUAa-GGCUguaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 118976 0.67 0.684924
Target:  5'- gCCGCCgGCGUguaCGACGaggaGCCCcCCGc -3'
miRNA:   3'- -GGCGGgCGUAag-GCUGUa---CGGGcGGC- -5'
29640 3' -60 NC_006151.1 + 33776 0.67 0.684924
Target:  5'- cCCGCCCGCcccgUCCGACcgaccaUCCGUCc -3'
miRNA:   3'- -GGCGGGCGua--AGGCUGuac---GGGCGGc -5'
29640 3' -60 NC_006151.1 + 49996 0.67 0.684924
Target:  5'- aCGUCCGCGUUugcgcgCCGcGCGcgcgGCCCGCgCGg -3'
miRNA:   3'- gGCGGGCGUAA------GGC-UGUa---CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 119807 0.67 0.684924
Target:  5'- aCGCCgGC-UUCCGGCAcgcgcUGCgCGCUc -3'
miRNA:   3'- gGCGGgCGuAAGGCUGU-----ACGgGCGGc -5'
29640 3' -60 NC_006151.1 + 36569 0.67 0.675121
Target:  5'- gUGgCCGCAgcgCCGGCAcggcggggGCCCGCUu -3'
miRNA:   3'- gGCgGGCGUaa-GGCUGUa-------CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 9007 0.67 0.675121
Target:  5'- aCCGCCC-CAcccUUCCcccgGACccccucccGCCCGCCGg -3'
miRNA:   3'- -GGCGGGcGU---AAGG----CUGua------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 38110 0.67 0.675121
Target:  5'- uCCGCgaCGCGaUCCccggGGCcgGCCCgGCCGa -3'
miRNA:   3'- -GGCGg-GCGUaAGG----CUGuaCGGG-CGGC- -5'
29640 3' -60 NC_006151.1 + 81794 0.67 0.675121
Target:  5'- gCGCCCGUcgaagagcCCGGCGaaGCCCGCgGg -3'
miRNA:   3'- gGCGGGCGuaa-----GGCUGUa-CGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 92172 0.67 0.675121
Target:  5'- gCCGUgCGCg--CCGACGgcgacggGgCCGCCGa -3'
miRNA:   3'- -GGCGgGCGuaaGGCUGUa------CgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 58307 0.67 0.675121
Target:  5'- cUCGCCCcgGCGUUUCaGCGgcgGCgCGCCGg -3'
miRNA:   3'- -GGCGGG--CGUAAGGcUGUa--CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 107979 0.67 0.675121
Target:  5'- cCUGCCCagaaGCcc-CCGGCGcaGCCCGCCa -3'
miRNA:   3'- -GGCGGG----CGuaaGGCUGUa-CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 136849 0.67 0.675121
Target:  5'- gCCGCCggccuCGCGcgCCG-CGUGaCCGCCGu -3'
miRNA:   3'- -GGCGG-----GCGUaaGGCuGUACgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 140418 0.67 0.675121
Target:  5'- cUCGCCCGUc--CCGcuggaggaguACGUGCCCGgCGc -3'
miRNA:   3'- -GGCGGGCGuaaGGC----------UGUACGGGCgGC- -5'
29640 3' -60 NC_006151.1 + 114039 0.68 0.669223
Target:  5'- gCUGCCCuucgaccucggccagGCGguggCCGACAacUGCCUGUCGc -3'
miRNA:   3'- -GGCGGG---------------CGUaa--GGCUGU--ACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 107607 0.68 0.665285
Target:  5'- cCCGCCgGCg--CCGcc--GCCCGCCa -3'
miRNA:   3'- -GGCGGgCGuaaGGCuguaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 129370 0.68 0.665285
Target:  5'- gCGCUCgGgGUUCCGGCAcGCCCaCCa -3'
miRNA:   3'- gGCGGG-CgUAAGGCUGUaCGGGcGGc -5'
29640 3' -60 NC_006151.1 + 36696 0.68 0.665285
Target:  5'- aCCGCgaGCcccugCuCGACGaGCCCGCCGc -3'
miRNA:   3'- -GGCGggCGuaa--G-GCUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 107550 0.68 0.665285
Target:  5'- cCCGCCgGCg--CCGcc--GCCCGCCa -3'
miRNA:   3'- -GGCGGgCGuaaGGCuguaCGGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.