miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 38110 0.67 0.675121
Target:  5'- uCCGCgaCGCGaUCCccggGGCcgGCCCgGCCGa -3'
miRNA:   3'- -GGCGg-GCGUaAGG----CUGuaCGGG-CGGC- -5'
29640 3' -60 NC_006151.1 + 38175 0.68 0.655425
Target:  5'- gUCGCCCGCA--CCGug--GCgCCGCUGg -3'
miRNA:   3'- -GGCGGGCGUaaGGCuguaCG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 38301 0.66 0.761191
Target:  5'- gCCGCCgCGCGgcCCGg---GCCCGCg- -3'
miRNA:   3'- -GGCGG-GCGUaaGGCuguaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 38326 0.7 0.518689
Target:  5'- -aGCCCGCGc-CCGGCcUGCCC-CCGc -3'
miRNA:   3'- ggCGGGCGUaaGGCUGuACGGGcGGC- -5'
29640 3' -60 NC_006151.1 + 38573 0.69 0.606008
Target:  5'- gCGCCgCGCGc-CCGGg--GCCCGCCGc -3'
miRNA:   3'- gGCGG-GCGUaaGGCUguaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 38899 0.7 0.518689
Target:  5'- aCUGCCCGC---CCGAgGUgGCCCGCg- -3'
miRNA:   3'- -GGCGGGCGuaaGGCUgUA-CGGGCGgc -5'
29640 3' -60 NC_006151.1 + 39154 0.72 0.394602
Target:  5'- cCCGCgCCGCGgcggccUCuCGGCGcUGCUCGCCGc -3'
miRNA:   3'- -GGCG-GGCGUa-----AG-GCUGU-ACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 39542 0.71 0.463293
Target:  5'- uUCGCCCGCGUggaGGCcuccuucGCCCGCCu -3'
miRNA:   3'- -GGCGGGCGUAaggCUGua-----CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 39681 0.66 0.76486
Target:  5'- aCCGCCagCGCGUgcuccccaCCguggacggcugcaagGACAUgGCCCGCCa -3'
miRNA:   3'- -GGCGG--GCGUAa-------GG---------------CUGUA-CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 39867 0.68 0.645547
Target:  5'- -aGCuCCGCGgccCCGAgG-GCCUGCCGg -3'
miRNA:   3'- ggCG-GGCGUaa-GGCUgUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 40136 0.68 0.635659
Target:  5'- gCGUCCGCGgcggcgacggCCGGCcccgcgGCCCGCuCGg -3'
miRNA:   3'- gGCGGGCGUaa--------GGCUGua----CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 41542 0.69 0.606995
Target:  5'- cCCGCCCGCGgacccccggUgCGACGgaaggggcaggcucgGCgCGCCGa -3'
miRNA:   3'- -GGCGGGCGUa--------AgGCUGUa--------------CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 43197 0.71 0.454359
Target:  5'- aCCGCCUGCAcccggUUCCGGCG---CUGCCGg -3'
miRNA:   3'- -GGCGGGCGU-----AAGGCUGUacgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 43959 0.75 0.272219
Target:  5'- cCCGgCCGCc--CCGACccGCCCGCCu -3'
miRNA:   3'- -GGCgGGCGuaaGGCUGuaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 45937 0.69 0.586321
Target:  5'- aCCGCCUGCccgCUGuGCaAUGCCCGCg- -3'
miRNA:   3'- -GGCGGGCGuaaGGC-UG-UACGGGCGgc -5'
29640 3' -60 NC_006151.1 + 46843 0.7 0.537744
Target:  5'- gCCGCCCcccgggGCGggccUCCGGCGUcuaGCUCGUCGg -3'
miRNA:   3'- -GGCGGG------CGUa---AGGCUGUA---CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 48586 0.73 0.378485
Target:  5'- gCCGCCCGgGgugcgccUCGuCGUGCCUGCCGc -3'
miRNA:   3'- -GGCGGGCgUaa-----GGCuGUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 48942 0.7 0.509261
Target:  5'- gCUGCCCGCGcgCgagGACGUGUUCGCCu -3'
miRNA:   3'- -GGCGGGCGUaaGg--CUGUACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 49341 0.66 0.770331
Target:  5'- -gGCCUGCGcgCCgGACccGCgCCGCCa -3'
miRNA:   3'- ggCGGGCGUaaGG-CUGuaCG-GGCGGc -5'
29640 3' -60 NC_006151.1 + 49401 0.68 0.625769
Target:  5'- -gGCCCGCAcgcccUUCagGACcUGCCCGCa- -3'
miRNA:   3'- ggCGGGCGU-----AAGg-CUGuACGGGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.