miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 61413 0.66 0.742599
Target:  5'- aCGcCCCGCcgUCCucCucgGCCCcGCCGc -3'
miRNA:   3'- gGC-GGGCGuaAGGcuGua-CGGG-CGGC- -5'
29640 3' -60 NC_006151.1 + 61447 0.73 0.378485
Target:  5'- cCCGCCCGCGUccgCCGcCAUGUgCggGCCGc -3'
miRNA:   3'- -GGCGGGCGUAa--GGCuGUACGgG--CGGC- -5'
29640 3' -60 NC_006151.1 + 61991 0.68 0.615883
Target:  5'- aCGCCUGCAagggCacggguGACGUGCgCGCCGc -3'
miRNA:   3'- gGCGGGCGUaa--Gg-----CUGUACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 62298 0.69 0.566756
Target:  5'- -gGCCagCGCGgccUUCGGCGUGUCCGCCc -3'
miRNA:   3'- ggCGG--GCGUa--AGGCUGUACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 63700 0.7 0.528185
Target:  5'- gCGUgCGCGUUCgcggCGACGUggcGCCCGUCGa -3'
miRNA:   3'- gGCGgGCGUAAG----GCUGUA---CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 64190 0.72 0.403654
Target:  5'- gCCGCCCGCGaucgccccgggcaggUCCGGCGUGggCGCCu -3'
miRNA:   3'- -GGCGGGCGUa--------------AGGCUGUACggGCGGc -5'
29640 3' -60 NC_006151.1 + 64290 0.68 0.615883
Target:  5'- -aGCgCCGCGUugUCgGGCGUGCCgcagcgCGCCGu -3'
miRNA:   3'- ggCG-GGCGUA--AGgCUGUACGG------GCGGC- -5'
29640 3' -60 NC_006151.1 + 64491 0.68 0.665285
Target:  5'- aCGCCCGCGggcgCgGGCGgcgggcGCgCGCCGc -3'
miRNA:   3'- gGCGGGCGUaa--GgCUGUa-----CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 65798 0.67 0.704399
Target:  5'- gCCGCCCGgcg-CgGACGUGCCgCGgUGg -3'
miRNA:   3'- -GGCGGGCguaaGgCUGUACGG-GCgGC- -5'
29640 3' -60 NC_006151.1 + 66034 0.74 0.32565
Target:  5'- uCCGCCCGCGUgaaCCGcCgGUGCCUGUCc -3'
miRNA:   3'- -GGCGGGCGUAa--GGCuG-UACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 66231 0.68 0.645547
Target:  5'- gCGCCCGCGcagaagCuCGACgGUGCgCGCCu -3'
miRNA:   3'- gGCGGGCGUaa----G-GCUG-UACGgGCGGc -5'
29640 3' -60 NC_006151.1 + 67567 0.73 0.347603
Target:  5'- gCGCCCGCGggcgUCCa----GCCCGCCGa -3'
miRNA:   3'- gGCGGGCGUa---AGGcuguaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 67688 0.66 0.779356
Target:  5'- cUCGCgCGCAgcUCCcGCuUGUCCGCCu -3'
miRNA:   3'- -GGCGgGCGUa-AGGcUGuACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 67960 0.7 0.515853
Target:  5'- gCGCCgggggccaggaccaCGCAgUCgCGGCG-GCCCGCCGg -3'
miRNA:   3'- gGCGG--------------GCGUaAG-GCUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 68016 0.67 0.704399
Target:  5'- cUCGgCgGCGUccaggUCCaGGCG-GCCCGCCGg -3'
miRNA:   3'- -GGCgGgCGUA-----AGG-CUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 68632 0.71 0.454359
Target:  5'- aCUGCCCGCGcgucgCCGGCuccacUGCCacgGCCGg -3'
miRNA:   3'- -GGCGGGCGUaa---GGCUGu----ACGGg--CGGC- -5'
29640 3' -60 NC_006151.1 + 68775 0.68 0.665285
Target:  5'- gCGCgCGCGg--CGAgGUGCgCCGCCGc -3'
miRNA:   3'- gGCGgGCGUaagGCUgUACG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 69340 0.77 0.20557
Target:  5'- gCCGCCCGCGagCgCGGCGUaGCCCGCg- -3'
miRNA:   3'- -GGCGGGCGUaaG-GCUGUA-CGGGCGgc -5'
29640 3' -60 NC_006151.1 + 69460 0.67 0.704399
Target:  5'- gCGCgCCGCGggcgCCGGCAccGUcgCCGCCGc -3'
miRNA:   3'- gGCG-GGCGUaa--GGCUGUa-CG--GGCGGC- -5'
29640 3' -60 NC_006151.1 + 70785 0.68 0.625769
Target:  5'- gCGCCUccgGCA--CCGGCGUGgCCGUCGu -3'
miRNA:   3'- gGCGGG---CGUaaGGCUGUACgGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.