Results 121 - 140 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29640 | 3' | -60 | NC_006151.1 | + | 72045 | 0.69 | 0.566756 |
Target: 5'- cCCGCCgCGCAgcgUCuCGGCGgcGCgCGCCa -3' miRNA: 3'- -GGCGG-GCGUa--AG-GCUGUa-CGgGCGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 72224 | 0.69 | 0.586321 |
Target: 5'- -gGCCCGUGUUCUGcaGCAccagcgacUGCCCGCgGc -3' miRNA: 3'- ggCGGGCGUAAGGC--UGU--------ACGGGCGgC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 73100 | 0.68 | 0.645547 |
Target: 5'- cUCGCCgUGCAccucgCCGGCGgcgcGCCCGCgCGg -3' miRNA: 3'- -GGCGG-GCGUaa---GGCUGUa---CGGGCG-GC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 73204 | 0.68 | 0.625769 |
Target: 5'- gCUGCCCGCGggCCag---GCCCGCgGg -3' miRNA: 3'- -GGCGGGCGUaaGGcuguaCGGGCGgC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 73961 | 0.68 | 0.645547 |
Target: 5'- aUGuCCCGCGUggccaCCGuggcCAUGCCCGCg- -3' miRNA: 3'- gGC-GGGCGUAa----GGCu---GUACGGGCGgc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 75778 | 0.7 | 0.518689 |
Target: 5'- aCGUCCGCGU----GCGUGUCCGCCa -3' miRNA: 3'- gGCGGGCGUAaggcUGUACGGGCGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 76196 | 0.68 | 0.655425 |
Target: 5'- gCGCagCCGCAUggCCGACGagaugUGCgUGCCGu -3' miRNA: 3'- gGCG--GGCGUAa-GGCUGU-----ACGgGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 77173 | 0.66 | 0.770331 |
Target: 5'- gCGUCCGCcg-CCG-CGUccacGUCCGCCGc -3' miRNA: 3'- gGCGGGCGuaaGGCuGUA----CGGGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 77276 | 0.69 | 0.572609 |
Target: 5'- gCCGCCuCGCucacccauuugCCGcGCcgcguGUGCCCGCCGc -3' miRNA: 3'- -GGCGG-GCGuaa--------GGC-UG-----UACGGGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 78161 | 0.67 | 0.714055 |
Target: 5'- cUCGgCCGCcgUggUCGAggcCGUGUCCGCCGu -3' miRNA: 3'- -GGCgGGCGuaA--GGCU---GUACGGGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 78519 | 0.7 | 0.547363 |
Target: 5'- cCCGCgaUCGCGgacCCGGCGgggGCCuCGCCGc -3' miRNA: 3'- -GGCG--GGCGUaa-GGCUGUa--CGG-GCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 81388 | 0.69 | 0.59025 |
Target: 5'- gCCGCgCCGCGgcgCCcagguuggccaggguGGCGUcCCCGCCGa -3' miRNA: 3'- -GGCG-GGCGUaa-GG---------------CUGUAcGGGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 81794 | 0.67 | 0.675121 |
Target: 5'- gCGCCCGUcgaagagcCCGGCGaaGCCCGCgGg -3' miRNA: 3'- gGCGGGCGuaa-----GGCUGUa-CGGGCGgC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 82519 | 0.66 | 0.761191 |
Target: 5'- gUGCCCGCGgaugCgCGuguCGUugagcgcccccaGCCCGCCGa -3' miRNA: 3'- gGCGGGCGUaa--G-GCu--GUA------------CGGGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 84530 | 0.69 | 0.606008 |
Target: 5'- gCGCCCcCGUUCCccgugGGCuucuggGCCCGCCc -3' miRNA: 3'- gGCGGGcGUAAGG-----CUGua----CGGGCGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 84916 | 0.69 | 0.609956 |
Target: 5'- gCCGCgCGCGgcgccgccUCCGGCGUGCUcuucggcacgugguaCGCCa -3' miRNA: 3'- -GGCGgGCGUa-------AGGCUGUACGG---------------GCGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 85151 | 0.66 | 0.751944 |
Target: 5'- aCCGCgUGCGgcagggggCCGGCGccgcggGCgCCGCCGc -3' miRNA: 3'- -GGCGgGCGUaa------GGCUGUa-----CG-GGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 85629 | 0.71 | 0.44552 |
Target: 5'- gCCGCCgCGCGgcgCCagcgggGACGcGCCCGCCu -3' miRNA: 3'- -GGCGG-GCGUaa-GG------CUGUaCGGGCGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 86069 | 0.73 | 0.378485 |
Target: 5'- -aGCCCGCAgucUCCGcGCGcGCgCCGCCGc -3' miRNA: 3'- ggCGGGCGUa--AGGC-UGUaCG-GGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 86184 | 0.76 | 0.236939 |
Target: 5'- gCCGCCgCGCugcccCCGGCggGCCCGCUGc -3' miRNA: 3'- -GGCGG-GCGuaa--GGCUGuaCGGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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