miRNA display CGI


Results 141 - 160 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 86230 0.75 0.278493
Target:  5'- aCCGCCCGCGcUgCGACAucggcgccgUGCUgGCCGu -3'
miRNA:   3'- -GGCGGGCGUaAgGCUGU---------ACGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 86308 0.71 0.463293
Target:  5'- aCUGCCCGCAg-CUGGgggcCGUGCUCGCCc -3'
miRNA:   3'- -GGCGGGCGUaaGGCU----GUACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 86848 0.68 0.625769
Target:  5'- cCCGCCgagCGCAgcgcCCGGCGacuacaucuucgUGCCCGCgGc -3'
miRNA:   3'- -GGCGG---GCGUaa--GGCUGU------------ACGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 86998 0.67 0.694686
Target:  5'- cUCGCCCGagccCCGGCcc-CCCGCCa -3'
miRNA:   3'- -GGCGGGCguaaGGCUGuacGGGCGGc -5'
29640 3' -60 NC_006151.1 + 87179 0.69 0.606008
Target:  5'- gCGCCCGCGgcgCCGccGCAgcUGCugCCGCCc -3'
miRNA:   3'- gGCGGGCGUaa-GGC--UGU--ACG--GGCGGc -5'
29640 3' -60 NC_006151.1 + 87307 0.7 0.518689
Target:  5'- cUCGCCCGUggcgcacgccGUgCCGGCGcucccggGCCUGCCGg -3'
miRNA:   3'- -GGCGGGCG----------UAaGGCUGUa------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 87424 0.66 0.733163
Target:  5'- -gGCCCag---CCGGuggcCGUGCCCGCCGc -3'
miRNA:   3'- ggCGGGcguaaGGCU----GUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 87458 0.66 0.761191
Target:  5'- gCCGCCCcCGcUCCGGCuccagcagcgGCagCCGCCGc -3'
miRNA:   3'- -GGCGGGcGUaAGGCUGua--------CG--GGCGGC- -5'
29640 3' -60 NC_006151.1 + 87497 0.7 0.518689
Target:  5'- gCCGCCCcCGUUcaggccgccgccCCGGCcgcGCCCGCCu -3'
miRNA:   3'- -GGCGGGcGUAA------------GGCUGua-CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 87697 0.72 0.402825
Target:  5'- cCCGCCCGCc--CCGACGaccaauaaagauUGCCCGgUCGc -3'
miRNA:   3'- -GGCGGGCGuaaGGCUGU------------ACGGGC-GGC- -5'
29640 3' -60 NC_006151.1 + 89457 0.67 0.723646
Target:  5'- aCGCCUGCA--CCaGCAggGCCCGCg- -3'
miRNA:   3'- gGCGGGCGUaaGGcUGUa-CGGGCGgc -5'
29640 3' -60 NC_006151.1 + 90469 0.66 0.742599
Target:  5'- -aGCgCGCAgcgCCaGCAUgGCUCGCCGg -3'
miRNA:   3'- ggCGgGCGUaa-GGcUGUA-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 90687 0.66 0.751944
Target:  5'- uCC-CCCGCGgcgggggcggCgGACGcGCCCGCCc -3'
miRNA:   3'- -GGcGGGCGUaa--------GgCUGUaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 90807 0.66 0.751944
Target:  5'- gUCGCCCGCAccggCCG-CAggugGUCaCGCUGa -3'
miRNA:   3'- -GGCGGGCGUaa--GGCuGUa---CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 91271 0.7 0.541585
Target:  5'- aCGCCCGCG-UCCGcaaaguacgcgcgccGCGUcagcaGCCgCGCCGg -3'
miRNA:   3'- gGCGGGCGUaAGGC---------------UGUA-----CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 91486 0.66 0.733163
Target:  5'- cUCGCCgCGCAcgCUGGCGUGCaCCagcaGCCc -3'
miRNA:   3'- -GGCGG-GCGUaaGGCUGUACG-GG----CGGc -5'
29640 3' -60 NC_006151.1 + 91791 0.66 0.770331
Target:  5'- aCCGCCCgGCuuauaugCgCGGgAUGcCCCGCCc -3'
miRNA:   3'- -GGCGGG-CGuaa----G-GCUgUAC-GGGCGGc -5'
29640 3' -60 NC_006151.1 + 92043 0.7 0.499906
Target:  5'- aCCGCCCGCug-CCuGCugcGCCUGCUGc -3'
miRNA:   3'- -GGCGGGCGuaaGGcUGua-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 92172 0.67 0.675121
Target:  5'- gCCGUgCGCg--CCGACGgcgacggGgCCGCCGa -3'
miRNA:   3'- -GGCGgGCGuaaGGCUGUa------CgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 92427 0.7 0.528185
Target:  5'- gCGCCCGUGUUCCcGCuggugcUGCgCUGCCGc -3'
miRNA:   3'- gGCGGGCGUAAGGcUGu-----ACG-GGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.