miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 118723 0.66 0.751944
Target:  5'- gCCGCCUGCugcaCGGCuacgugcuggGCCCGgCGg -3'
miRNA:   3'- -GGCGGGCGuaagGCUGua--------CGGGCgGC- -5'
29640 3' -60 NC_006151.1 + 114535 0.81 0.12265
Target:  5'- -aGaCCCGCGga-CGACGUGCCCGCCGu -3'
miRNA:   3'- ggC-GGGCGUaagGCUGUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 114039 0.68 0.669223
Target:  5'- gCUGCCCuucgaccucggccagGCGguggCCGACAacUGCCUGUCGc -3'
miRNA:   3'- -GGCGGG---------------CGUaa--GGCUGU--ACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 113366 0.66 0.779356
Target:  5'- gCCGCaaCCGCAcgCaCGGCgaGUGCCUGCUc -3'
miRNA:   3'- -GGCG--GGCGUaaG-GCUG--UACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 112582 0.71 0.44552
Target:  5'- cUCGCCCGCGggcUUCGugGaGgCCGCCGc -3'
miRNA:   3'- -GGCGGGCGUa--AGGCugUaCgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 112415 0.68 0.625769
Target:  5'- gCCGCgCGCAgaUCGACc-GCCgCGCCGc -3'
miRNA:   3'- -GGCGgGCGUaaGGCUGuaCGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 111384 0.69 0.586321
Target:  5'- gCCGUcgucgCCGCcg-CCGGCAccCCCGCCGg -3'
miRNA:   3'- -GGCG-----GGCGuaaGGCUGUacGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 110204 0.69 0.606995
Target:  5'- gCCGCCUGCGggagacgCgGACGacccucaagggcagcGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCGUaa-----GgCUGUa--------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 109775 0.69 0.557035
Target:  5'- gCGCCCGCAccacccCCGAgcu-CCCGCCGg -3'
miRNA:   3'- gGCGGGCGUaa----GGCUguacGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 109591 0.7 0.50551
Target:  5'- cCCGCCCGCGcucuucaccccgCCGcCGUcgGaCCCGCCGg -3'
miRNA:   3'- -GGCGGGCGUaa----------GGCuGUA--C-GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 109432 0.67 0.714055
Target:  5'- aCCGCCgGCcccaccaccUUCgCGGCcgGCCCcgacGCCGg -3'
miRNA:   3'- -GGCGGgCGu--------AAG-GCUGuaCGGG----CGGC- -5'
29640 3' -60 NC_006151.1 + 109258 0.71 0.472318
Target:  5'- uCCGCUgGCGgccCCGACGUcGCUgGCCGc -3'
miRNA:   3'- -GGCGGgCGUaa-GGCUGUA-CGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 109129 0.69 0.580436
Target:  5'- gCGCCCGCcggCCGggcaccuccgucuccACAU-CCCGCCGc -3'
miRNA:   3'- gGCGGGCGuaaGGC---------------UGUAcGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 108367 0.68 0.615883
Target:  5'- aCCGCaUCGUAgagCCGAaggccgGUGCaCCGCCGg -3'
miRNA:   3'- -GGCG-GGCGUaa-GGCUg-----UACG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 108233 0.67 0.714055
Target:  5'- aCCGCCCGCcccUCCaccaccgucugcucaGACuacgcuccccagGCCCGCCc -3'
miRNA:   3'- -GGCGGGCGua-AGG---------------CUGua----------CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 108179 0.66 0.747283
Target:  5'- cCCGCCCGCccccccaccaccgUCUGcuCAgacuacgcuccccagGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCGua-----------AGGCu-GUa--------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 107979 0.67 0.675121
Target:  5'- cCUGCCCagaaGCcc-CCGGCGcaGCCCGCCa -3'
miRNA:   3'- -GGCGGG----CGuaaGGCUGUa-CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 107702 0.7 0.547363
Target:  5'- -aGCCCGCcg-CCGGCAccaaGgCCGCCGc -3'
miRNA:   3'- ggCGGGCGuaaGGCUGUa---CgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 107607 0.68 0.665285
Target:  5'- cCCGCCgGCg--CCGcc--GCCCGCCa -3'
miRNA:   3'- -GGCGGgCGuaaGGCuguaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 107573 0.72 0.411156
Target:  5'- -aGCCCGCGgagCUGACu--CCCGCCGc -3'
miRNA:   3'- ggCGGGCGUaa-GGCUGuacGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.