miRNA display CGI


Results 101 - 120 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 86998 0.67 0.694686
Target:  5'- cUCGCCCGagccCCGGCcc-CCCGCCa -3'
miRNA:   3'- -GGCGGGCguaaGGCUGuacGGGCGGc -5'
29640 3' -60 NC_006151.1 + 86848 0.68 0.625769
Target:  5'- cCCGCCgagCGCAgcgcCCGGCGacuacaucuucgUGCCCGCgGc -3'
miRNA:   3'- -GGCGG---GCGUaa--GGCUGU------------ACGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 86308 0.71 0.463293
Target:  5'- aCUGCCCGCAg-CUGGgggcCGUGCUCGCCc -3'
miRNA:   3'- -GGCGGGCGUaaGGCU----GUACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 86230 0.75 0.278493
Target:  5'- aCCGCCCGCGcUgCGACAucggcgccgUGCUgGCCGu -3'
miRNA:   3'- -GGCGGGCGUaAgGCUGU---------ACGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 86184 0.76 0.236939
Target:  5'- gCCGCCgCGCugcccCCGGCggGCCCGCUGc -3'
miRNA:   3'- -GGCGG-GCGuaa--GGCUGuaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 86069 0.73 0.378485
Target:  5'- -aGCCCGCAgucUCCGcGCGcGCgCCGCCGc -3'
miRNA:   3'- ggCGGGCGUa--AGGC-UGUaCG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 85629 0.71 0.44552
Target:  5'- gCCGCCgCGCGgcgCCagcgggGACGcGCCCGCCu -3'
miRNA:   3'- -GGCGG-GCGUaa-GG------CUGUaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 85151 0.66 0.751944
Target:  5'- aCCGCgUGCGgcagggggCCGGCGccgcggGCgCCGCCGc -3'
miRNA:   3'- -GGCGgGCGUaa------GGCUGUa-----CG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 84916 0.69 0.609956
Target:  5'- gCCGCgCGCGgcgccgccUCCGGCGUGCUcuucggcacgugguaCGCCa -3'
miRNA:   3'- -GGCGgGCGUa-------AGGCUGUACGG---------------GCGGc -5'
29640 3' -60 NC_006151.1 + 84530 0.69 0.606008
Target:  5'- gCGCCCcCGUUCCccgugGGCuucuggGCCCGCCc -3'
miRNA:   3'- gGCGGGcGUAAGG-----CUGua----CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 82519 0.66 0.761191
Target:  5'- gUGCCCGCGgaugCgCGuguCGUugagcgcccccaGCCCGCCGa -3'
miRNA:   3'- gGCGGGCGUaa--G-GCu--GUA------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 81794 0.67 0.675121
Target:  5'- gCGCCCGUcgaagagcCCGGCGaaGCCCGCgGg -3'
miRNA:   3'- gGCGGGCGuaa-----GGCUGUa-CGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 81388 0.69 0.59025
Target:  5'- gCCGCgCCGCGgcgCCcagguuggccaggguGGCGUcCCCGCCGa -3'
miRNA:   3'- -GGCG-GGCGUaa-GG---------------CUGUAcGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 78519 0.7 0.547363
Target:  5'- cCCGCgaUCGCGgacCCGGCGgggGCCuCGCCGc -3'
miRNA:   3'- -GGCG--GGCGUaa-GGCUGUa--CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 78161 0.67 0.714055
Target:  5'- cUCGgCCGCcgUggUCGAggcCGUGUCCGCCGu -3'
miRNA:   3'- -GGCgGGCGuaA--GGCU---GUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 77276 0.69 0.572609
Target:  5'- gCCGCCuCGCucacccauuugCCGcGCcgcguGUGCCCGCCGc -3'
miRNA:   3'- -GGCGG-GCGuaa--------GGC-UG-----UACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 77173 0.66 0.770331
Target:  5'- gCGUCCGCcg-CCG-CGUccacGUCCGCCGc -3'
miRNA:   3'- gGCGGGCGuaaGGCuGUA----CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 76196 0.68 0.655425
Target:  5'- gCGCagCCGCAUggCCGACGagaugUGCgUGCCGu -3'
miRNA:   3'- gGCG--GGCGUAa-GGCUGU-----ACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 75778 0.7 0.518689
Target:  5'- aCGUCCGCGU----GCGUGUCCGCCa -3'
miRNA:   3'- gGCGGGCGUAaggcUGUACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 73961 0.68 0.645547
Target:  5'- aUGuCCCGCGUggccaCCGuggcCAUGCCCGCg- -3'
miRNA:   3'- gGC-GGGCGUAa----GGCu---GUACGGGCGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.