Results 41 - 60 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29640 | 3' | -60 | NC_006151.1 | + | 113366 | 0.66 | 0.779356 |
Target: 5'- gCCGCaaCCGCAcgCaCGGCgaGUGCCUGCUc -3' miRNA: 3'- -GGCG--GGCGUaaG-GCUG--UACGGGCGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 121030 | 0.66 | 0.779356 |
Target: 5'- aCCGCaCGCGgcacuuugugCUGGCcUGCCCGCgCGu -3' miRNA: 3'- -GGCGgGCGUaa--------GGCUGuACGGGCG-GC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 2960 | 0.66 | 0.779356 |
Target: 5'- gCGCCgGCGaagCCGAgGUcCCgCGCCGa -3' miRNA: 3'- gGCGGgCGUaa-GGCUgUAcGG-GCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 56536 | 0.66 | 0.779356 |
Target: 5'- gCCG-CCGgGUUCgGGCcccugcucgGCCUGCCGg -3' miRNA: 3'- -GGCgGGCgUAAGgCUGua-------CGGGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 100066 | 0.66 | 0.779356 |
Target: 5'- gUGCgCGCGgccgCCGAgGUGCUcgaggCGCCGg -3' miRNA: 3'- gGCGgGCGUaa--GGCUgUACGG-----GCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 77173 | 0.66 | 0.770331 |
Target: 5'- gCGUCCGCcg-CCG-CGUccacGUCCGCCGc -3' miRNA: 3'- gGCGGGCGuaaGGCuGUA----CGGGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 49578 | 0.66 | 0.770331 |
Target: 5'- -aGCCCGCGcucgCCGGC--GCCCcgGCCa -3' miRNA: 3'- ggCGGGCGUaa--GGCUGuaCGGG--CGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 137312 | 0.66 | 0.751944 |
Target: 5'- uCCGCCgCGCGgugCuCGACGcGCUCGCg- -3' miRNA: 3'- -GGCGG-GCGUaa-G-GCUGUaCGGGCGgc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 90687 | 0.66 | 0.751944 |
Target: 5'- uCC-CCCGCGgcgggggcggCgGACGcGCCCGCCc -3' miRNA: 3'- -GGcGGGCGUaa--------GgCUGUaCGGGCGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 130181 | 0.66 | 0.751944 |
Target: 5'- gCCGCgaaGCGgacgUCCucGGgGUGCCCGCUGa -3' miRNA: 3'- -GGCGgg-CGUa---AGG--CUgUACGGGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 38301 | 0.66 | 0.761191 |
Target: 5'- gCCGCCgCGCGgcCCGg---GCCCGCg- -3' miRNA: 3'- -GGCGG-GCGUaaGGCuguaCGGGCGgc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 87458 | 0.66 | 0.761191 |
Target: 5'- gCCGCCCcCGcUCCGGCuccagcagcgGCagCCGCCGc -3' miRNA: 3'- -GGCGGGcGUaAGGCUGua--------CG--GGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 101176 | 0.66 | 0.761191 |
Target: 5'- gCCGCCCuGacggCCGACGccguggacgcgUGCCUGCgCGa -3' miRNA: 3'- -GGCGGG-CguaaGGCUGU-----------ACGGGCG-GC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 7075 | 0.66 | 0.761191 |
Target: 5'- cCCGCgCGCc-UCUGauuuGCAUGCCCgGCCc -3' miRNA: 3'- -GGCGgGCGuaAGGC----UGUACGGG-CGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 107357 | 0.66 | 0.761191 |
Target: 5'- cCCgGCCCGCGgccCCGAUccccgggcUGCCCcCCGa -3' miRNA: 3'- -GG-CGGGCGUaa-GGCUGu-------ACGGGcGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 82519 | 0.66 | 0.761191 |
Target: 5'- gUGCCCGCGgaugCgCGuguCGUugagcgcccccaGCCCGCCGa -3' miRNA: 3'- gGCGGGCGUaa--G-GCu--GUA------------CGGGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 18534 | 0.66 | 0.76211 |
Target: 5'- cCCGCCCGCGUcggcacccggaacggCCG-CGaGgCCGCCc -3' miRNA: 3'- -GGCGGGCGUAa--------------GGCuGUaCgGGCGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 39681 | 0.66 | 0.76486 |
Target: 5'- aCCGCCagCGCGUgcuccccaCCguggacggcugcaagGACAUgGCCCGCCa -3' miRNA: 3'- -GGCGG--GCGUAa-------GG---------------CUGUA-CGGGCGGc -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 93066 | 0.66 | 0.769422 |
Target: 5'- uCCGUCCGCGggcUCCGucuCAccucUGCcguccccCCGCCGu -3' miRNA: 3'- -GGCGGGCGUa--AGGCu--GU----ACG-------GGCGGC- -5' |
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29640 | 3' | -60 | NC_006151.1 | + | 50809 | 0.66 | 0.769422 |
Target: 5'- cCCGCCagCGCAgcgUCCacgccucGGCccGCgCCGCCGu -3' miRNA: 3'- -GGCGG--GCGUa--AGG-------CUGuaCG-GGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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