miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 118917 0.66 0.742599
Target:  5'- -aGCgCCGCAUggcgUCCGuCAUGagCGCCGa -3'
miRNA:   3'- ggCG-GGCGUA----AGGCuGUACggGCGGC- -5'
29640 3' -60 NC_006151.1 + 90469 0.66 0.742599
Target:  5'- -aGCgCGCAgcgCCaGCAUgGCUCGCCGg -3'
miRNA:   3'- ggCGgGCGUaa-GGcUGUA-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 137021 0.66 0.733163
Target:  5'- gCGCCCuGCucggccugCCGgacGCGUGCCCcCCGg -3'
miRNA:   3'- gGCGGG-CGuaa-----GGC---UGUACGGGcGGC- -5'
29640 3' -60 NC_006151.1 + 136442 0.66 0.733163
Target:  5'- gCCGCgCGCuacgUCGACgagcgcGUGCgCGCCGa -3'
miRNA:   3'- -GGCGgGCGuaa-GGCUG------UACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 91486 0.66 0.733163
Target:  5'- cUCGCCgCGCAcgCUGGCGUGCaCCagcaGCCc -3'
miRNA:   3'- -GGCGG-GCGUaaGGCUGUACG-GG----CGGc -5'
29640 3' -60 NC_006151.1 + 58133 0.66 0.733163
Target:  5'- gUCGCCCGCg--CCGuacgcggccGCGUGCCa-CCGg -3'
miRNA:   3'- -GGCGGGCGuaaGGC---------UGUACGGgcGGC- -5'
29640 3' -60 NC_006151.1 + 87424 0.66 0.733163
Target:  5'- -gGCCCag---CCGGuggcCGUGCCCGCCGc -3'
miRNA:   3'- ggCGGGcguaaGGCU----GUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 140278 0.66 0.742599
Target:  5'- aCGCCCGUcgacgagcucGUgcgCCGGCGccGCCUGCgGg -3'
miRNA:   3'- gGCGGGCG----------UAa--GGCUGUa-CGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 61413 0.66 0.742599
Target:  5'- aCGcCCCGCcgUCCucCucgGCCCcGCCGc -3'
miRNA:   3'- gGC-GGGCGuaAGGcuGua-CGGG-CGGC- -5'
29640 3' -60 NC_006151.1 + 108179 0.66 0.747283
Target:  5'- cCCGCCCGCccccccaccaccgUCUGcuCAgacuacgcuccccagGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCGua-----------AGGCu-GUa--------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 130181 0.66 0.751944
Target:  5'- gCCGCgaaGCGgacgUCCucGGgGUGCCCGCUGa -3'
miRNA:   3'- -GGCGgg-CGUa---AGG--CUgUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 90687 0.66 0.751944
Target:  5'- uCC-CCCGCGgcgggggcggCgGACGcGCCCGCCc -3'
miRNA:   3'- -GGcGGGCGUaa--------GgCUGUaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 137312 0.66 0.751944
Target:  5'- uCCGCCgCGCGgugCuCGACGcGCUCGCg- -3'
miRNA:   3'- -GGCGG-GCGUaa-G-GCUGUaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 122387 0.66 0.751944
Target:  5'- gCGCgCCGCGggcgcgcgCUGGCGgcGCUCGCCGc -3'
miRNA:   3'- gGCG-GGCGUaa------GGCUGUa-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 95221 0.66 0.751944
Target:  5'- gCUGCgCCGCAcgcccucgaCCGAgGcGCCCGUCGg -3'
miRNA:   3'- -GGCG-GGCGUaa-------GGCUgUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 90807 0.66 0.751944
Target:  5'- gUCGCCCGCAccggCCG-CAggugGUCaCGCUGa -3'
miRNA:   3'- -GGCGGGCGUaa--GGCuGUa---CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 85151 0.66 0.751944
Target:  5'- aCCGCgUGCGgcagggggCCGGCGccgcggGCgCCGCCGc -3'
miRNA:   3'- -GGCGgGCGUaa------GGCUGUa-----CG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 23909 0.66 0.751944
Target:  5'- gUCGgUCGCGggcCCGACG-GgCCGCCGg -3'
miRNA:   3'- -GGCgGGCGUaa-GGCUGUaCgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 122534 0.66 0.751944
Target:  5'- gCGCacgaCGUGUUCCGGCccGCCuCGCgGc -3'
miRNA:   3'- gGCGg---GCGUAAGGCUGuaCGG-GCGgC- -5'
29640 3' -60 NC_006151.1 + 118723 0.66 0.751944
Target:  5'- gCCGCCUGCugcaCGGCuacgugcuggGCCCGgCGg -3'
miRNA:   3'- -GGCGGGCGuaagGCUGua--------CGGGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.