miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 92664 0.67 0.719818
Target:  5'- cUCGCCCuGCug-CCGGCGgccggggacgcgcGCUCGCCGc -3'
miRNA:   3'- -GGCGGG-CGuaaGGCUGUa------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 109432 0.67 0.714055
Target:  5'- aCCGCCgGCcccaccaccUUCgCGGCcgGCCCcgacGCCGg -3'
miRNA:   3'- -GGCGGgCGu--------AAG-GCUGuaCGGG----CGGC- -5'
29640 3' -60 NC_006151.1 + 108233 0.67 0.714055
Target:  5'- aCCGCCCGCcccUCCaccaccgucugcucaGACuacgcuccccagGCCCGCCc -3'
miRNA:   3'- -GGCGGGCGua-AGG---------------CUGua----------CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 78161 0.67 0.714055
Target:  5'- cUCGgCCGCcgUggUCGAggcCGUGUCCGCCGu -3'
miRNA:   3'- -GGCgGGCGuaA--GGCU---GUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 57454 0.67 0.714055
Target:  5'- gCC-CCCGCG--UCGGCcagGUGCCgCGCCGc -3'
miRNA:   3'- -GGcGGGCGUaaGGCUG---UACGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 136442 0.66 0.733163
Target:  5'- gCCGCgCGCuacgUCGACgagcgcGUGCgCGCCGa -3'
miRNA:   3'- -GGCGgGCGuaa-GGCUG------UACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 137021 0.66 0.733163
Target:  5'- gCGCCCuGCucggccugCCGgacGCGUGCCCcCCGg -3'
miRNA:   3'- gGCGGG-CGuaa-----GGC---UGUACGGGcGGC- -5'
29640 3' -60 NC_006151.1 + 90807 0.66 0.751944
Target:  5'- gUCGCCCGCAccggCCG-CAggugGUCaCGCUGa -3'
miRNA:   3'- -GGCGGGCGUaa--GGCuGUa---CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 85151 0.66 0.751944
Target:  5'- aCCGCgUGCGgcagggggCCGGCGccgcggGCgCCGCCGc -3'
miRNA:   3'- -GGCGgGCGUaa------GGCUGUa-----CG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 23909 0.66 0.751944
Target:  5'- gUCGgUCGCGggcCCGACG-GgCCGCCGg -3'
miRNA:   3'- -GGCgGGCGUaa-GGCUGUaCgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 122534 0.66 0.751944
Target:  5'- gCGCacgaCGUGUUCCGGCccGCCuCGCgGc -3'
miRNA:   3'- gGCGg---GCGUAAGGCUGuaCGG-GCGgC- -5'
29640 3' -60 NC_006151.1 + 118723 0.66 0.751944
Target:  5'- gCCGCCUGCugcaCGGCuacgugcuggGCCCGgCGg -3'
miRNA:   3'- -GGCGGGCGuaagGCUGua--------CGGGCgGC- -5'
29640 3' -60 NC_006151.1 + 108179 0.66 0.747283
Target:  5'- cCCGCCCGCccccccaccaccgUCUGcuCAgacuacgcuccccagGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCGua-----------AGGCu-GUa--------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 61413 0.66 0.742599
Target:  5'- aCGcCCCGCcgUCCucCucgGCCCcGCCGc -3'
miRNA:   3'- gGC-GGGCGuaAGGcuGua-CGGG-CGGC- -5'
29640 3' -60 NC_006151.1 + 140278 0.66 0.742599
Target:  5'- aCGCCCGUcgacgagcucGUgcgCCGGCGccGCCUGCgGg -3'
miRNA:   3'- gGCGGGCG----------UAa--GGCUGUa-CGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 137258 0.66 0.742599
Target:  5'- uUCGCCuCGCGcgcCCGG--UGCCCGCgGg -3'
miRNA:   3'- -GGCGG-GCGUaa-GGCUguACGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 37298 0.66 0.742599
Target:  5'- aCCuCUCGCucauggCCGACGggccCCCGCCGa -3'
miRNA:   3'- -GGcGGGCGuaa---GGCUGUac--GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 33911 0.66 0.742599
Target:  5'- gCGCcuCCGCG-UCCGGCGggcggaucgagGCCCGCgCGc -3'
miRNA:   3'- gGCG--GGCGUaAGGCUGUa----------CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 118917 0.66 0.742599
Target:  5'- -aGCgCCGCAUggcgUCCGuCAUGagCGCCGa -3'
miRNA:   3'- ggCG-GGCGUA----AGGCuGUACggGCGGC- -5'
29640 3' -60 NC_006151.1 + 90469 0.66 0.742599
Target:  5'- -aGCgCGCAgcgCCaGCAUgGCUCGCCGg -3'
miRNA:   3'- ggCGgGCGUaa-GGcUGUA-CGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.