miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 3' -51.8 NC_006151.1 + 103044 0.66 0.985739
Target:  5'- gGUUC-GCG-CugCugGCCGAGGCGCAg -3'
miRNA:   3'- gCAAGaUGUaGugG--UGGCUCUGCGUg -5'
29641 3' -51.8 NC_006151.1 + 138199 0.66 0.987396
Target:  5'- cCGUgCUGCggCACC-UCGAcGCGCACu -3'
miRNA:   3'- -GCAaGAUGuaGUGGuGGCUcUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 114132 0.66 0.987396
Target:  5'- ----gUGCGcCGCCGCCGAGcCGCGg -3'
miRNA:   3'- gcaagAUGUaGUGGUGGCUCuGCGUg -5'
29641 3' -51.8 NC_006151.1 + 2126 0.66 0.987396
Target:  5'- ------cCGUCGCCGCCGcGGACGC-Cg -3'
miRNA:   3'- gcaagauGUAGUGGUGGC-UCUGCGuG- -5'
29641 3' -51.8 NC_006151.1 + 68855 0.66 0.987396
Target:  5'- cCGcgCgacGCGUCcagcAgCGCCGGGGCGCGCc -3'
miRNA:   3'- -GCaaGa--UGUAG----UgGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 104648 0.66 0.981931
Target:  5'- aCGUgc-GCGcgGCCGCCGAcgcGGCGCGCg -3'
miRNA:   3'- -GCAagaUGUagUGGUGGCU---CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 97191 0.66 0.981931
Target:  5'- aCGcgCU-CGaCGgUGCCGAGGCGCACg -3'
miRNA:   3'- -GCaaGAuGUaGUgGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 75655 0.67 0.972098
Target:  5'- gGggCcgGC-UCGCCGCCGAGcagguaGCGCGCc -3'
miRNA:   3'- gCaaGa-UGuAGUGGUGGCUC------UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 124105 0.67 0.972098
Target:  5'- cCGcUUCUACGUCugcccGCCGCCGuccggcuccacGGugGUGCg -3'
miRNA:   3'- -GC-AAGAUGUAG-----UGGUGGC-----------UCugCGUG- -5'
29641 3' -51.8 NC_006151.1 + 95953 0.67 0.974319
Target:  5'- --cUCUGCAgcgagagcccgaCGCCGCCGcGGCGCAg -3'
miRNA:   3'- gcaAGAUGUa-----------GUGGUGGCuCUGCGUg -5'
29641 3' -51.8 NC_006151.1 + 103693 0.67 0.974854
Target:  5'- gGUgCUGCG-CGCCGCCGuGGaGCACc -3'
miRNA:   3'- gCAaGAUGUaGUGGUGGCuCUgCGUG- -5'
29641 3' -51.8 NC_006151.1 + 138674 0.67 0.974854
Target:  5'- --aUCUACGUgGCCcccaaCGAGACGgACg -3'
miRNA:   3'- gcaAGAUGUAgUGGug---GCUCUGCgUG- -5'
29641 3' -51.8 NC_006151.1 + 21465 0.67 0.976662
Target:  5'- gCGUggUCccGCGUCGCCggcucgggcaggcgGCCGGGGgGCGCg -3'
miRNA:   3'- -GCA--AGa-UGUAGUGG--------------UGGCUCUgCGUG- -5'
29641 3' -51.8 NC_006151.1 + 53633 0.67 0.977406
Target:  5'- gCGcUUCUGCAgcUCGCgCACCGucGGCGgGCu -3'
miRNA:   3'- -GC-AAGAUGU--AGUG-GUGGCu-CUGCgUG- -5'
29641 3' -51.8 NC_006151.1 + 86593 0.67 0.977406
Target:  5'- cCGagCUGCuggcgcgCGCCGCCGAGuCGC-Cg -3'
miRNA:   3'- -GCaaGAUGua-----GUGGUGGCUCuGCGuG- -5'
29641 3' -51.8 NC_006151.1 + 117107 0.67 0.977406
Target:  5'- --cUCgUGCGUCACCagGCCG--GCGCACa -3'
miRNA:   3'- gcaAG-AUGUAGUGG--UGGCucUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 121186 0.67 0.977406
Target:  5'- cCGUgCUGCA-CG-CGCuCGGGGCGCGCa -3'
miRNA:   3'- -GCAaGAUGUaGUgGUG-GCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 96204 0.66 0.979076
Target:  5'- gGggCgccGCGUCGCCguggcggcggccgcGgCGAGGCGCACa -3'
miRNA:   3'- gCaaGa--UGUAGUGG--------------UgGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 65572 0.66 0.981931
Target:  5'- gCG-UCUuCAcgGCCACCGAGcCGUACa -3'
miRNA:   3'- -GCaAGAuGUagUGGUGGCUCuGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 81585 0.66 0.981931
Target:  5'- --gUCUcgcgcGCGUCGCCgggGCCGccGGCGCGCa -3'
miRNA:   3'- gcaAGA-----UGUAGUGG---UGGCu-CUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.