miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 57290 0.67 0.36276
Target:  5'- gGGCGUCCagcgcggcCuuGGCGGcGCGGC-CGAAg -3'
miRNA:   3'- gCCGCGGG--------GggCCGCC-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 56350 0.67 0.36276
Target:  5'- gCGcGCGCCCCgCCGGCGcGGaaGCUaCGGc -3'
miRNA:   3'- -GC-CGCGGGG-GGCCGC-CUgcCGA-GCUu -5'
29641 5' -67.3 NC_006151.1 + 86806 0.67 0.355362
Target:  5'- gCGGgGCCuCCCCGGCGccCGGCccagugCGGc -3'
miRNA:   3'- -GCCgCGG-GGGGCCGCcuGCCGa-----GCUu -5'
29641 5' -67.3 NC_006151.1 + 107035 0.67 0.355362
Target:  5'- gCGGCGCggCCCCUGGCcGGCGaGC-CGGc -3'
miRNA:   3'- -GCCGCG--GGGGGCCGcCUGC-CGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 127912 0.67 0.355362
Target:  5'- gGGgGCCCCUCGGggagcggGGGCGGCgagaCGGg -3'
miRNA:   3'- gCCgCGGGGGGCCg------CCUGCCGa---GCUu -5'
29641 5' -67.3 NC_006151.1 + 131506 0.67 0.355362
Target:  5'- aGGaGCCCCgCgCGGgGGaACGGCUgGAAg -3'
miRNA:   3'- gCCgCGGGG-G-GCCgCC-UGCCGAgCUU- -5'
29641 5' -67.3 NC_006151.1 + 142270 0.67 0.355362
Target:  5'- gGaGCGCCCcguCCCGGCGGccagacCGGC-CGGGa -3'
miRNA:   3'- gC-CGCGGG---GGGCCGCCu-----GCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 69066 0.67 0.355362
Target:  5'- gCGGCuccucGUCCCCCaGCGGcACGGCcagcUCGGc -3'
miRNA:   3'- -GCCG-----CGGGGGGcCGCC-UGCCG----AGCUu -5'
29641 5' -67.3 NC_006151.1 + 50428 0.67 0.360529
Target:  5'- aGGCGCCCCugcgcgCCGGCGGccugggcaccgcccGCGggcGCUCGc- -3'
miRNA:   3'- gCCGCGGGG------GGCCGCC--------------UGC---CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 77887 0.67 0.36276
Target:  5'- gCGuGCGCCCCCCGcucaGCGGcgagacGCGGCccaCGGc -3'
miRNA:   3'- -GC-CGCGGGGGGC----CGCC------UGCCGa--GCUu -5'
29641 5' -67.3 NC_006151.1 + 5605 0.68 0.300063
Target:  5'- gCGGUcCCCUCCGGCGGAgGGggCGc- -3'
miRNA:   3'- -GCCGcGGGGGGCCGCCUgCCgaGCuu -5'
29641 5' -67.3 NC_006151.1 + 36264 0.68 0.300063
Target:  5'- cCGG-GUCCCCCGGuCGGGCucuccaucagGGCUcCGAGc -3'
miRNA:   3'- -GCCgCGGGGGGCC-GCCUG----------CCGA-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 90672 0.68 0.300063
Target:  5'- gCGGCGggccgcuuguCCCCCgCGGCGGG-GGCggCGGAc -3'
miRNA:   3'- -GCCGC----------GGGGG-GCCGCCUgCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 69220 0.68 0.306596
Target:  5'- cCGGcCGCCCCa-GGCGGugGaguGCUCGu- -3'
miRNA:   3'- -GCC-GCGGGGggCCGCCugC---CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 95334 0.68 0.313238
Target:  5'- aGGCGCCgCCCGccaggcacGCGGGCaGGUUCa-- -3'
miRNA:   3'- gCCGCGGgGGGC--------CGCCUG-CCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 102510 0.68 0.313238
Target:  5'- gCGGCGCgggaCCCCGGCGG-CGuCUaCGAc -3'
miRNA:   3'- -GCCGCGg---GGGGCCGCCuGCcGA-GCUu -5'
29641 5' -67.3 NC_006151.1 + 135146 0.68 0.313238
Target:  5'- gGGCaGaCCCagCCCGGCGGgcGCGGCcCGGAc -3'
miRNA:   3'- gCCG-C-GGG--GGGCCGCC--UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 30676 0.68 0.313238
Target:  5'- cCGGgaaGCcuCCCCCGGCGGGCGGgggggugUCGGGg -3'
miRNA:   3'- -GCCg--CG--GGGGGCCGCCUGCCg------AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 97171 0.68 0.319988
Target:  5'- -aGCGCUCggCCCGGCGcacGACGcGCUCGAc -3'
miRNA:   3'- gcCGCGGG--GGGCCGC---CUGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 72919 0.68 0.300063
Target:  5'- uGGCGaCCgCCUCGGCGGGCGugaagaaCUUGAAg -3'
miRNA:   3'- gCCGC-GG-GGGGCCGCCUGCc------GAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.