miRNA display CGI


Results 121 - 140 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 114701 0.71 0.178339
Target:  5'- gGGCGCgUCCCCGG-GGGCGGUUucCGGAa -3'
miRNA:   3'- gCCGCG-GGGGGCCgCCUGCCGA--GCUU- -5'
29641 5' -67.3 NC_006151.1 + 68035 0.71 0.182143
Target:  5'- aGGCGgCCCgCCGGCGcGGCgggcacgGGCUCGGc -3'
miRNA:   3'- gCCGCgGGG-GGCCGC-CUG-------CCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 20304 0.71 0.18689
Target:  5'- gGGCGCCCgCCgUGGCGuuGGCGGCggCGAGc -3'
miRNA:   3'- gCCGCGGG-GG-GCCGC--CUGCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 130291 0.71 0.18689
Target:  5'- gGGCGCgCgCCGGCcGACGGCgCGGAg -3'
miRNA:   3'- gCCGCGgGgGGCCGcCUGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 47214 0.71 0.191301
Target:  5'- uCGGgGCUCUcgggUCGGCuGGGCGGCUCGGc -3'
miRNA:   3'- -GCCgCGGGG----GGCCG-CCUGCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 48229 0.71 0.191301
Target:  5'- -cGCGCUCCCCGGCGcGAgGaGCUgGAAu -3'
miRNA:   3'- gcCGCGGGGGGCCGC-CUgC-CGAgCUU- -5'
29641 5' -67.3 NC_006151.1 + 40255 0.71 0.195802
Target:  5'- gGGCGCCCCCuCGGCc--CGGC-CGGAc -3'
miRNA:   3'- gCCGCGGGGG-GCCGccuGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 129242 0.71 0.200395
Target:  5'- gGuGCGCCCCUCGGUGacGCGGCgCGAGg -3'
miRNA:   3'- gC-CGCGGGGGGCCGCc-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 52370 0.71 0.200395
Target:  5'- cCGGCGCgCCCCCGGggcccgcggGGGCGGCgggCGc- -3'
miRNA:   3'- -GCCGCG-GGGGGCCg--------CCUGCCGa--GCuu -5'
29641 5' -67.3 NC_006151.1 + 125241 0.71 0.204609
Target:  5'- cCGGCGCuCCCCCGGCccggcggGGAC-GCcCGAGc -3'
miRNA:   3'- -GCCGCG-GGGGGCCG-------CCUGcCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 65794 0.72 0.15109
Target:  5'- uGGCGCCgCCCGGCgcGGACGuGCcgCGGu -3'
miRNA:   3'- gCCGCGGgGGGCCG--CCUGC-CGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 123008 0.72 0.15109
Target:  5'- cCGGCGCgCCCCCgccGGCGGACgccguGGCgugggCGGAc -3'
miRNA:   3'- -GCCGCG-GGGGG---CCGCCUG-----CCGa----GCUU- -5'
29641 5' -67.3 NC_006151.1 + 57164 0.72 0.154738
Target:  5'- gGGCGUCCCCCGGC--GCGGCccaGAAg -3'
miRNA:   3'- gCCGCGGGGGGCCGccUGCCGag-CUU- -5'
29641 5' -67.3 NC_006151.1 + 33224 0.72 0.154738
Target:  5'- gCGGgGCgCCCCGGCGGGCGGga-GGGg -3'
miRNA:   3'- -GCCgCGgGGGGCCGCCUGCCgagCUU- -5'
29641 5' -67.3 NC_006151.1 + 56598 0.72 0.162272
Target:  5'- gCGGaCGCgCCCCGGCGG-CGcGCUCa-- -3'
miRNA:   3'- -GCC-GCGgGGGGCCGCCuGC-CGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 33910 0.72 0.174194
Target:  5'- -cGCGCCUccgcgUCCGGCGGGCGGaUCGAGg -3'
miRNA:   3'- gcCGCGGG-----GGGCCGCCUGCCgAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 7017 0.72 0.174194
Target:  5'- cCGGC-CCCCgCGGCGGccaucuCGGCUCGc- -3'
miRNA:   3'- -GCCGcGGGGgGCCGCCu-----GCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 19838 0.73 0.147521
Target:  5'- aCGGgGCCCggggucguCUCGGCGGAgaGGCUCGGGg -3'
miRNA:   3'- -GCCgCGGG--------GGGCCGCCUg-CCGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 133679 0.73 0.144029
Target:  5'- gCGGCGCgCCCCCgaGGCGGucucguCGGCggCGAc -3'
miRNA:   3'- -GCCGCG-GGGGG--CCGCCu-----GCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 40569 0.73 0.144029
Target:  5'- gCGGCGgCggCCgCGGCGGAgGGCUCGGc -3'
miRNA:   3'- -GCCGCgG--GGgGCCGCCUgCCGAGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.