miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 36264 0.68 0.300063
Target:  5'- cCGG-GUCCCCCGGuCGGGCucuccaucagGGCUcCGAGc -3'
miRNA:   3'- -GCCgCGGGGGGCC-GCCUG----------CCGA-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 90672 0.68 0.300063
Target:  5'- gCGGCGggccgcuuguCCCCCgCGGCGGG-GGCggCGGAc -3'
miRNA:   3'- -GCCGC----------GGGGG-GCCGCCUgCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 95334 0.68 0.313238
Target:  5'- aGGCGCCgCCCGccaggcacGCGGGCaGGUUCa-- -3'
miRNA:   3'- gCCGCGGgGGGC--------CGCCUG-CCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 135146 0.68 0.313238
Target:  5'- gGGCaGaCCCagCCCGGCGGgcGCGGCcCGGAc -3'
miRNA:   3'- gCCG-C-GGG--GGGCCGCC--UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 30676 0.68 0.313238
Target:  5'- cCGGgaaGCcuCCCCCGGCGGGCGGgggggugUCGGGg -3'
miRNA:   3'- -GCCg--CG--GGGGGCCGCCUGCCg------AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 97171 0.68 0.319988
Target:  5'- -aGCGCUCggCCCGGCGcacGACGcGCUCGAc -3'
miRNA:   3'- gcCGCGGG--GGGCCGC---CUGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 117793 0.68 0.319988
Target:  5'- gGGCGCCaCgCCCGGCGgGGCGGggCc-- -3'
miRNA:   3'- gCCGCGG-G-GGGCCGC-CUGCCgaGcuu -5'
29641 5' -67.3 NC_006151.1 + 102510 0.68 0.313238
Target:  5'- gCGGCGCgggaCCCCGGCGG-CGuCUaCGAc -3'
miRNA:   3'- -GCCGCGg---GGGGCCGCCuGCcGA-GCUu -5'
29641 5' -67.3 NC_006151.1 + 20633 0.68 0.28111
Target:  5'- gGGCGCCCCCUgGGCGGcACcagGGC-CGu- -3'
miRNA:   3'- gCCGCGGGGGG-CCGCC-UG---CCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 64869 0.68 0.293637
Target:  5'- gGGcCGCUgCCCGGCGGGagcagGGCcgCGAAg -3'
miRNA:   3'- gCC-GCGGgGGGCCGCCUg----CCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 81356 0.68 0.28111
Target:  5'- -cGCGCCcggggCCCCGGCGGGCGccaGCgCGAGc -3'
miRNA:   3'- gcCGCGG-----GGGGCCGCCUGC---CGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 43689 0.68 0.293637
Target:  5'- aGGgGCCCgCCGGCGcGACGGggaGAGg -3'
miRNA:   3'- gCCgCGGGgGGCCGC-CUGCCgagCUU- -5'
29641 5' -67.3 NC_006151.1 + 106183 0.68 0.28732
Target:  5'- -cGCGCaCCCgccgcuggagCCGGCGGuGCGGCUCGc- -3'
miRNA:   3'- gcCGCG-GGG----------GGCCGCC-UGCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 37174 0.68 0.28111
Target:  5'- cCGGCGCCCgCC-GCGGccccGCGGCccUCGGc -3'
miRNA:   3'- -GCCGCGGGgGGcCGCC----UGCCG--AGCUu -5'
29641 5' -67.3 NC_006151.1 + 36632 0.68 0.293637
Target:  5'- uCGGCGCCCggCGGCGG-CGGCg---- -3'
miRNA:   3'- -GCCGCGGGggGCCGCCuGCCGagcuu -5'
29641 5' -67.3 NC_006151.1 + 2286 0.68 0.293637
Target:  5'- gCGGgGCgCCCgCGGCGGcgACGGCgccCGGGg -3'
miRNA:   3'- -GCCgCGgGGG-GCCGCC--UGCCGa--GCUU- -5'
29641 5' -67.3 NC_006151.1 + 59141 0.68 0.28732
Target:  5'- uGGCGCCCgCgGGCGGGuccaGGC-CGGc -3'
miRNA:   3'- gCCGCGGGgGgCCGCCUg---CCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 133302 0.68 0.28732
Target:  5'- aGGUuCUCCCCGG-GGGCGGCccgugUCGAGg -3'
miRNA:   3'- gCCGcGGGGGGCCgCCUGCCG-----AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 140447 0.68 0.28111
Target:  5'- cCGGCGCCugCCUCGGCGGgaucauggACGcGCUgGAc -3'
miRNA:   3'- -GCCGCGG--GGGGCCGCC--------UGC-CGAgCUu -5'
29641 5' -67.3 NC_006151.1 + 109539 0.68 0.28111
Target:  5'- -aGCGCCCCCCGGaggcgccgUGGACguGGCcCGAGc -3'
miRNA:   3'- gcCGCGGGGGGCC--------GCCUG--CCGaGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.